Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 14-141
Cow position: chr18:33749955-33750080 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 0

Conread position: 14-192
Cow position: chr18:51275700-51275528 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 110, 0

Conread position: 15-218
Cow position: chr18:29237375-29237566 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 18, 51

Conread position: 19-450
Cow position: chr18:54171301-54170873 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 34

Conread position: 22-147
Cow position: chr18:16842690-16842569 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 22-391
Cow position: chr18:37111912-37111560 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 240
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 125, 55

Conread position: 23-397
Cow position: chr18:46855563-46855193 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 257
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 256, 51

Conread position: 23-416
Cow position: chr18:46868323-46867935 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 226, 99

Conread position: 24-443
Cow position: chr18:8168942-8169359 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 159

Conread position: 39-436
Cow position: chr18:54003773-54004161 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 16

Conread position: 39-446
Cow position: chr18:51238547-51238956 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 273
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 7, 71

Conread position: 62-436
Cow position: chr18:16176340-16175966 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 74-449
Cow position: chr18:29765254-29765637 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 98-450
Cow position: chr18:51276691-51276344 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 236
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 107, 36

Conread position: 116-382
Cow position: chr18:32260186-32259921 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 190
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 51

Conread position: 135-353
Cow position: chr18:16263544-16263323 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 58

Conread position: 135-450
Cow position: chr18:33750362-33750677 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 92

Conread position: 136-445
Cow position: chr18:28973556-28973229 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 39

Conread position: 136-445
Cow position: chr18:51481186-51481494 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 6

Conread position: 139-445
Cow position: chr18:27987414-27987722 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 42

Conread position: 146-284
Cow position: chr18:17992063-17991925 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 110

Conread position: 146-284
Cow position: chr18:24700755-24700616 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 146-436
Cow position: chr18:52651277-52651567 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 54

Conread position: 146-443
Cow position: chr18:37505421-37505716 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 146-446
Cow position: chr18:30849319-30849006 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 205
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 23

Conread position: 146-450
Cow position: chr18:33336220-33336529 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 147-277
Cow position: chr18:47719227-47719093 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 147-419
Cow position: chr18:30672258-30671989 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 61

Conread position: 147-445
Cow position: chr18:14130751-14131051 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 33

Conread position: 147-445
Cow position: chr18:40478744-40479043 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 15

Conread position: 148-450
Cow position: chr18:54023765-54023476 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 150-445
Cow position: chr18:14416339-14416639 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 30

Conread position: 150-445
Cow position: chr18:23798011-23798302 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 19

Conread position: 150-445
Cow position: chr18:32652566-32652871 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 23

Conread position: 150-445
Cow position: chr18:36508696-36508993 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position: chr18:41840461-41840154 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-450
Cow position: chr18:25351112-25351416 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 151-436
Cow position: chr18:27837952-27837665 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 28

Conread position: 152-270
Cow position: chr18:53786202-53786322 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 152-283
Cow position: chr18:16534343-16534474 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 153-450
Cow position: chr18:33269191-33269490 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 106

Conread position: 163-449
Cow position: chr18:22602856-22603143 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 168

Conread position: 164-271
Cow position: chr18:51310956-51311063 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 164-272
Cow position: chr18:2019307-2019199 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 164-444
Cow position: chr18:19352751-19353024 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 46

Conread position: 164-444
Cow position: chr18:51342055-51342339 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr18:24040363-24040067 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 170-444
Cow position: chr18:11274730-11274453 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-444
Cow position: chr18:33953199-33952924 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 128

Conread position: 170-444
Cow position: chr18:51462703-51462427 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 81

Conread position: 170-449
Cow position: chr18:55088548-55088262 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 174-443
Cow position: chr18:27172580-27172848 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 41, 30

Conread position: 175-436
Cow position: chr18:16721942-16721675 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 108

Conread position: 180-443
Cow position: chr18:16304127-16304397 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 101

Conread position: 181-436
Cow position: chr18:16088539-16088797 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 183-428
Cow position: chr18:22385091-22385338 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 97, 9

Conread position: 188-444
Cow position: chr18:51660741-51660998 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 178

Conread position: 192-449
Cow position: chr18:54270912-54271163 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 238, 145

Conread position: 206-309
Cow position: chr18:49671210-49671312 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 209-434
Cow position: chr18:15855813-15856035 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 160
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 148, 128

Conread position: 223-444
Cow position: chr18:16079107-16079324 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 134, 20

Conread position: 248-431
Cow position: chr18:37158519-37158341 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 108, 23

Conread position: 264-449
Cow position: chr18:36256748-36256564 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 92, 70

Show alignments to all cow chromosomes.