Cow genome map
Conread name: | Ss1.1-rcbl0_011794.5 |
Conread position: | 14-141 |
Cow position: | chr18:33749955-33750080 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 101 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 14-192 |
Cow position: | chr18:51275700-51275528 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 136 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 15-218 |
Cow position: | chr18:29237375-29237566 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 149 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 18, 51 |
Conread position: | 19-450 |
Cow position: | chr18:54171301-54170873 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 339 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 337, 34 |
Conread position: | 22-147 |
Cow position: | chr18:16842690-16842569 (view UCSC Genome Browser custom track) |
Alignm length: | 126 |
Alignm identity: | 100 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 22-391 |
Cow position: | chr18:37111912-37111560 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 240 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 125, 55 |
Conread position: | 23-397 |
Cow position: | chr18:46855563-46855193 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 257 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 256, 51 |
Conread position: | 23-416 |
Cow position: | chr18:46868323-46867935 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 266 |
Alignm E-value: | 3.00018e-42 |
Alignm gaps (pig, cow): | 226, 99 |
Conread position: | 24-443 |
Cow position: | chr18:8168942-8169359 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 335, 159 |
Conread position: | 39-436 |
Cow position: | chr18:54003773-54004161 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 16 |
Conread position: | 39-446 |
Cow position: | chr18:51238547-51238956 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 273 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 7, 71 |
Conread position: | 62-436 |
Cow position: | chr18:16176340-16175966 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 33 |
Conread position: | 74-449 |
Cow position: | chr18:29765254-29765637 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 98-450 |
Cow position: | chr18:51276691-51276344 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 236 |
Alignm E-value: | 2e-29 |
Alignm gaps (pig, cow): | 107, 36 |
Conread position: | 116-382 |
Cow position: | chr18:32260186-32259921 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 190 |
Alignm E-value: | 6e-29 |
Alignm gaps (pig, cow): | 17, 51 |
Conread position: | 135-353 |
Cow position: | chr18:16263544-16263323 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 151 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 8, 58 |
Conread position: | 135-450 |
Cow position: | chr18:33750362-33750677 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 92 |
Conread position: | 136-445 |
Cow position: | chr18:28973556-28973229 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 39 |
Conread position: | 136-445 |
Cow position: | chr18:51481186-51481494 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 219, 6 |
Conread position: | 139-445 |
Cow position: | chr18:27987414-27987722 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 42 |
Conread position: | 146-284 |
Cow position: | chr18:17992063-17991925 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 109 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 16, 110 |
Conread position: | 146-284 |
Cow position: | chr18:24700755-24700616 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 118 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 146-436 |
Cow position: | chr18:52651277-52651567 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 54 |
Conread position: | 146-443 |
Cow position: | chr18:37505421-37505716 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 28 |
Conread position: | 146-446 |
Cow position: | chr18:30849319-30849006 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 205 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 59, 23 |
Conread position: | 146-450 |
Cow position: | chr18:33336220-33336529 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 147-277 |
Cow position: | chr18:47719227-47719093 (view UCSC Genome Browser custom track) |
Alignm length: | 135 |
Alignm identity: | 103 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 147-419 |
Cow position: | chr18:30672258-30671989 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 186 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 51, 61 |
Conread position: | 147-445 |
Cow position: | chr18:14130751-14131051 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 207, 33 |
Conread position: | 147-445 |
Cow position: | chr18:40478744-40479043 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 15 |
Conread position: | 148-450 |
Cow position: | chr18:54023765-54023476 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 180, 0 |
Conread position: | 150-445 |
Cow position: | chr18:14416339-14416639 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 30 |
Conread position: | 150-445 |
Cow position: | chr18:23798011-23798302 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 19 |
Conread position: | 150-445 |
Cow position: | chr18:32652566-32652871 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 23 |
Conread position: | 150-445 |
Cow position: | chr18:36508696-36508993 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 29 |
Conread position: | 150-445 |
Cow position: | chr18:41840461-41840154 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 29 |
Conread position: | 150-450 |
Cow position: | chr18:25351112-25351416 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 29 |
Conread position: | 151-436 |
Cow position: | chr18:27837952-27837665 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 28 |
Conread position: | 152-270 |
Cow position: | chr18:53786202-53786322 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 94 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 152-283 |
Cow position: | chr18:16534343-16534474 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 100 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 153-450 |
Cow position: | chr18:33269191-33269490 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 202, 106 |
Conread position: | 163-449 |
Cow position: | chr18:22602856-22603143 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 194, 168 |
Conread position: | 164-271 |
Cow position: | chr18:51310956-51311063 (view UCSC Genome Browser custom track) |
Alignm length: | 108 |
Alignm identity: | 87 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 164-272 |
Cow position: | chr18:2019307-2019199 (view UCSC Genome Browser custom track) |
Alignm length: | 109 |
Alignm identity: | 87 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 164-444 |
Cow position: | chr18:19352751-19353024 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 46 |
Conread position: | 164-444 |
Cow position: | chr18:51342055-51342339 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 164-449 |
Cow position: | chr18:24040363-24040067 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 170-444 |
Cow position: | chr18:11274730-11274453 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 0 |
Conread position: | 170-444 |
Cow position: | chr18:33953199-33952924 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 128 |
Conread position: | 170-444 |
Cow position: | chr18:51462703-51462427 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 81 |
Conread position: | 170-449 |
Cow position: | chr18:55088548-55088262 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 0 |
Conread position: | 174-443 |
Cow position: | chr18:27172580-27172848 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 188 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 41, 30 |
Conread position: | 175-436 |
Cow position: | chr18:16721942-16721675 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 183 |
Alignm E-value: | 4e-25 |
Alignm gaps (pig, cow): | 29, 108 |
Conread position: | 180-443 |
Cow position: | chr18:16304127-16304397 (view UCSC Genome Browser custom track) |
Alignm length: | 276 |
Alignm identity: | 186 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 19, 101 |
Conread position: | 181-436 |
Cow position: | chr18:16088539-16088797 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 215 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 174, 0 |
Conread position: | 183-428 |
Cow position: | chr18:22385091-22385338 (view UCSC Genome Browser custom track) |
Alignm length: | 250 |
Alignm identity: | 167 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 97, 9 |
Conread position: | 188-444 |
Cow position: | chr18:51660741-51660998 (view UCSC Genome Browser custom track) |
Alignm length: | 260 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 178 |
Conread position: | 192-449 |
Cow position: | chr18:54270912-54271163 (view UCSC Genome Browser custom track) |
Alignm length: | 259 |
Alignm identity: | 192 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 238, 145 |
Conread position: | 206-309 |
Cow position: | chr18:49671210-49671312 (view UCSC Genome Browser custom track) |
Alignm length: | 104 |
Alignm identity: | 88 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 209-434 |
Cow position: | chr18:15855813-15856035 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 160 |
Alignm E-value: | 2e-27 |
Alignm gaps (pig, cow): | 148, 128 |
Conread position: | 223-444 |
Cow position: | chr18:16079107-16079324 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 166 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 134, 20 |
Conread position: | 248-431 |
Cow position: | chr18:37158519-37158341 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 136 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 108, 23 |
Conread position: | 264-449 |
Cow position: | chr18:36256748-36256564 (view UCSC Genome Browser custom track) |
Alignm length: | 189 |
Alignm identity: | 136 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 92, 70 |
Show alignments to all cow chromosomes.