Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 1-241 |
| Cow position: | chr19:39689245-39689481 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 14-270 |
| Cow position: | chr19:32222788-32222533 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 14-435 |
| Cow position: | chr19:352414-351999 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 38 |
| Conread position: | 14-436 |
| Cow position: | chr19:162863-162452 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 52 |
| Conread position: | 14-450 |
| Cow position: | chr19:39669275-39668845 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 120 |
| Conread position: | 15-326 |
| Cow position: | chr19:377347-377034 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 124 |
| Conread position: | 15-443 |
| Cow position: | chr19:27037329-27036900 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 15-446 |
| Cow position: | chr19:3138171-3138601 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 59 |
| Conread position: | 15-450 |
| Cow position: | chr19:136790-136348 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 112 |
| Conread position: | 19-436 |
| Cow position: | chr19:27052267-27051860 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 63 |
| Conread position: | 20-239 |
| Cow position: | chr19:43256-43471 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 23-235 |
| Cow position: | chr19:17019071-17019283 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 23-444 |
| Cow position: | chr19:32182838-32182425 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 24-442 |
| Cow position: | chr19:189682-190077 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 75, 105 |
| Conread position: | 27-396 |
| Cow position: | chr19:10514246-10513877 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 30, 90 |
| Conread position: | 28-428 |
| Cow position: | chr19:32203399-32203786 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 33-250 |
| Cow position: | chr19:35377412-35377629 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 168 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 36-421 |
| Cow position: | chr19:25401762-25402153 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 41-282 |
| Cow position: | chr19:263413-263646 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 57-449 |
| Cow position: | chr19:35980424-35980807 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 71 |
| Conread position: | 64-436 |
| Cow position: | chr19:10956941-10956576 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 71-445 |
| Cow position: | chr19:39185254-39184880 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 75-405 |
| Cow position: | chr19:14213708-14213385 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 50, 94 |
| Conread position: | 102-433 |
| Cow position: | chr19:17670138-17670472 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 186 |
| Conread position: | 121-445 |
| Cow position: | chr19:439102-438777 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 52 |
| Conread position: | 124-450 |
| Cow position: | chr19:75906-75585 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 25 |
| Conread position: | 129-446 |
| Cow position: | chr19:893263-892943 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 274 |
| Conread position: | 135-454 |
| Cow position: | chr19:24751358-24751677 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 77 |
| Conread position: | 136-283 |
| Cow position: | chr19:4532284-4532132 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 146-270 |
| Cow position: | chr19:32665884-32666010 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 146-436 |
| Cow position: | chr19:341583-341876 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 146-445 |
| Cow position: | chr19:7488675-7488976 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 147-443 |
| Cow position: | chr19:172576-172867 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 32 |
| Conread position: | 147-450 |
| Cow position: | chr19:40887375-40887079 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 150-445 |
| Cow position: | chr19:33941978-33942263 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 32 |
| Conread position: | 150-445 |
| Cow position: | chr19:39390876-39391169 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 30 |
| Conread position: | 150-446 |
| Cow position: | chr19:28581293-28580999 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 151-443 |
| Cow position: | chr19:33873795-33874086 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 28 |
| Conread position: | 151-445 |
| Cow position: | chr19:204324-204621 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 0 |
| Conread position: | 151-445 |
| Cow position: | chr19:5729198-5729494 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 28 |
| Conread position: | 151-445 |
| Cow position: | chr19:40852070-40851775 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 186 |
| Conread position: | 152-283 |
| Cow position: | chr19:417029-417161 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-450 |
| Cow position: | chr19:40817334-40817062 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 161-445 |
| Cow position: | chr19:2274007-2273720 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 18 |
| Conread position: | 163-308 |
| Cow position: | chr19:687436-687580 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 163-355 |
| Cow position: | chr19:5208545-5208737 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-392 |
| Cow position: | chr19:38268-38499 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 194, 224 |
| Conread position: | 163-444 |
| Cow position: | chr19:7342444-7342724 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 50 |
| Conread position: | 164-283 |
| Cow position: | chr19:28376870-28376989 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 164-444 |
| Cow position: | chr19:28593637-28593919 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 203 |
| Conread position: | 164-444 |
| Cow position: | chr19:52151457-52151173 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr19:772970-773257 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 164-449 |
| Cow position: | chr19:32211700-32211411 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr19:43144089-43144375 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 91 |
| Conread position: | 166-400 |
| Cow position: | chr19:39698821-39699060 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 16, 166 |
| Conread position: | 173-449 |
| Cow position: | chr19:20105087-20105375 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 257 |
| Conread position: | 174-355 |
| Cow position: | chr19:43483-43663 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 184-395 |
| Cow position: | chr19:4386012-4386218 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 96, 154 |
| Conread position: | 189-447 |
| Cow position: | chr19:7069752-7069989 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 241, 56 |
| Conread position: | 206-449 |
| Cow position: | chr19:168184-167938 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 221-445 |
| Cow position: | chr19:12773551-12773776 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 137, 116 |
| Conread position: | 228-446 |
| Cow position: | chr19:5901056-5900835 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 327-445 |
| Cow position: | chr19:50685231-50685350 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 40 |
| Conread position: | 338-450 |
| Cow position: | chr19:28406154-28406041 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 53 |
Show alignments to all cow chromosomes.