Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 11-166 |
| Cow position: | chr20:22207132-22207285 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 11-405 |
| Cow position: | chr20:18315104-18314743 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 63 |
| Conread position: | 14-443 |
| Cow position: | chr20:10840506-10840093 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 15 |
| Conread position: | 14-448 |
| Cow position: | chr20:8215699-8216141 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 15-428 |
| Cow position: | chr20:18963610-18963195 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 10 |
| Conread position: | 15-446 |
| Cow position: | chr20:10855151-10854729 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 104 |
| Conread position: | 22-428 |
| Cow position: | chr20:19051436-19051037 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 23-256 |
| Cow position: | chr20:3893313-3893544 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 23-290 |
| Cow position: | chr20:35104982-35105245 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 156, 29 |
| Conread position: | 23-427 |
| Cow position: | chr20:20754273-20753884 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 23-444 |
| Cow position: | chr20:31377996-31377586 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 29-449 |
| Cow position: | chr20:2790695-2790280 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 37 |
| Conread position: | 32-450 |
| Cow position: | chr20:24371589-24371173 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 33-449 |
| Cow position: | chr20:8993011-8992596 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 34-327 |
| Cow position: | chr20:4653742-4654022 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 246, 88 |
| Conread position: | 38-279 |
| Cow position: | chr20:11591679-11591923 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 105, 39 |
| Conread position: | 40-407 |
| Cow position: | chr20:37580301-37580659 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 46-443 |
| Cow position: | chr20:7085463-7085065 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 93, 24 |
| Conread position: | 109-443 |
| Cow position: | chr20:3679290-3678964 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 114-423 |
| Cow position: | chr20:17704588-17704269 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 118-445 |
| Cow position: | chr20:35124790-35125118 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 23 |
| Conread position: | 122-446 |
| Cow position: | chr20:13679747-13679420 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 122-450 |
| Cow position: | chr20:16179517-16179190 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 13 |
| Conread position: | 135-443 |
| Cow position: | chr20:23469358-23469046 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 47 |
| Conread position: | 135-445 |
| Cow position: | chr20:13763215-13763526 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 24 |
| Conread position: | 135-446 |
| Cow position: | chr20:13791655-13791966 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 136-428 |
| Cow position: | chr20:21914635-21914931 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 139-343 |
| Cow position: | chr20:42076749-42076548 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 128 |
| Conread position: | 139-441 |
| Cow position: | chr20:25850679-25850372 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 139-445 |
| Cow position: | chr20:15097565-15097256 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 139-446 |
| Cow position: | chr20:21393905-21394218 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 145-278 |
| Cow position: | chr20:15947063-15946928 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 146-278 |
| Cow position: | chr20:3251816-3251683 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 114 |
| Conread position: | 146-314 |
| Cow position: | chr20:10845803-10845632 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-428 |
| Cow position: | chr20:3271023-3271302 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 27 |
| Conread position: | 146-445 |
| Cow position: | chr20:15292329-15292626 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 147-445 |
| Cow position: | chr20:29948821-29949121 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 150-443 |
| Cow position: | chr20:5535262-5535555 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 29 |
| Conread position: | 150-445 |
| Cow position: | chr20:8003901-8003607 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 29 |
| Conread position: | 150-445 |
| Cow position: | chr20:12438436-12438141 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 29 |
| Conread position: | 150-445 |
| Cow position: | chr20:27869522-27869822 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 150-445 |
| Cow position: | chr20:28565271-28564972 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 151-443 |
| Cow position: | chr20:30684646-30684940 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 22 |
| Conread position: | 151-445 |
| Cow position: | chr20:23799211-23799506 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 22 |
| Conread position: | 151-445 |
| Cow position: | chr20:28161096-28161390 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 28 |
| Conread position: | 160-446 |
| Cow position: | chr20:22716997-22716712 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 21, 51 |
| Conread position: | 163-444 |
| Cow position: | chr20:19438269-19438544 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 174 |
| Conread position: | 164-449 |
| Cow position: | chr20:823097-823386 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr20:25961433-25961722 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr20:38351008-38351295 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 163 |
| Conread position: | 173-347 |
| Cow position: | chr20:19352879-19353051 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 175-450 |
| Cow position: | chr20:42905561-42905830 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 7, 76 |
| Conread position: | 176-427 |
| Cow position: | chr20:20391241-20390991 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 8 |
| Conread position: | 194-426 |
| Cow position: | chr20:7115119-7114885 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 216-449 |
| Cow position: | chr20:22697658-22697892 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 141, 65 |
| Conread position: | 249-443 |
| Cow position: | chr20:14870527-14870332 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 110, 169 |
| Conread position: | 276-445 |
| Cow position: | chr20:12568968-12569140 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 278-444 |
| Cow position: | chr20:8974365-8974198 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 51 |
| Conread position: | 280-436 |
| Cow position: | chr20:15065721-15065881 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 331-439 |
| Cow position: | chr20:20931047-20931159 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 340-428 |
| Cow position: | chr20:24616347-24616257 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 347-446 |
| Cow position: | chr20:17661559-17661457 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.