Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 11-166
Cow position:
Alignm length: 156
Alignm identity: 122
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 63, 0

Conread position: 11-405
Cow position:
Alignm length: 396
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 63

Conread position: 14-443
Cow position:
Alignm length: 434
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 15

Conread position: 14-448
Cow position:
Alignm length: 448
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 36

Conread position: 15-428
Cow position:
Alignm length: 422
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 10

Conread position: 15-446
Cow position:
Alignm length: 438
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 104

Conread position: 22-428
Cow position:
Alignm length: 417
Alignm identity: 277
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 49

Conread position: 23-256
Cow position:
Alignm length: 237
Alignm identity: 165
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 52

Conread position: 23-290
Cow position:
Alignm length: 270
Alignm identity: 188
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 156, 29

Conread position: 23-427
Cow position:
Alignm length: 406
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 29

Conread position: 23-444
Cow position:
Alignm length: 434
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 15

Conread position: 29-449
Cow position:
Alignm length: 424
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 37

Conread position: 32-450
Cow position:
Alignm length: 428
Alignm identity: 280
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 27, 50

Conread position: 33-449
Cow position:
Alignm length: 423
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 25

Conread position: 34-327
Cow position:
Alignm length: 297
Alignm identity: 199
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 246, 88

Conread position: 38-279
Cow position:
Alignm length: 250
Alignm identity: 183
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 105, 39

Conread position: 40-407
Cow position:
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 91

Conread position: 46-443
Cow position:
Alignm length: 410
Alignm identity: 277
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 93, 24

Conread position: 109-443
Cow position:
Alignm length: 342
Alignm identity: 229
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 71, 35

Conread position: 114-423
Cow position:
Alignm length: 325
Alignm identity: 217
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 43, 13

Conread position: 118-445
Cow position:
Alignm length: 332
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 23

Conread position: 122-446
Cow position:
Alignm length: 331
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 13

Conread position: 122-450
Cow position:
Alignm length: 331
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 13

Conread position: 135-443
Cow position:
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 47

Conread position: 135-445
Cow position:
Alignm length: 314
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 24

Conread position: 135-446
Cow position:
Alignm length: 319
Alignm identity: 209
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 37

Conread position: 136-428
Cow position:
Alignm length: 298
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 139-343
Cow position:
Alignm length: 206
Alignm identity: 155
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 30, 128

Conread position: 139-441
Cow position:
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 41

Conread position: 139-445
Cow position:
Alignm length: 312
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 139-446
Cow position:
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 145-278
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 146-278
Cow position:
Alignm length: 135
Alignm identity: 103
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 16, 114

Conread position: 146-314
Cow position:
Alignm length: 172
Alignm identity: 137
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 16, 0

Conread position: 146-428
Cow position:
Alignm length: 287
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 27

Conread position: 146-445
Cow position:
Alignm length: 305
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 35

Conread position: 147-445
Cow position:
Alignm length: 304
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 150-443
Cow position:
Alignm length: 297
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 29

Conread position: 150-445
Cow position:
Alignm length: 298
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 29

Conread position: 150-445
Cow position:
Alignm length: 303
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 29

Conread position: 150-445
Cow position:
Alignm length: 302
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 23

Conread position: 151-443
Cow position:
Alignm length: 296
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 22

Conread position: 151-445
Cow position:
Alignm length: 298
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 22

Conread position: 151-445
Cow position:
Alignm length: 298
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 28

Conread position: 160-446
Cow position:
Alignm length: 293
Alignm identity: 214
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 21, 51

Conread position: 163-444
Cow position:
Alignm length: 284
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 174

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 163

Conread position: 173-347
Cow position:
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 31

Conread position: 175-450
Cow position:
Alignm length: 281
Alignm identity: 205
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 7, 76

Conread position: 176-427
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 31, 8

Conread position: 194-426
Cow position:
Alignm length: 235
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 216-449
Cow position:
Alignm length: 237
Alignm identity: 176
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 141, 65

Conread position: 249-443
Cow position:
Alignm length: 197
Alignm identity: 139
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 110, 169

Conread position: 276-445
Cow position:
Alignm length: 173
Alignm identity: 139
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 82, 0

Conread position: 278-444
Cow position:
Alignm length: 170
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 51

Conread position: 280-436
Cow position:
Alignm length: 161
Alignm identity: 129
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 77, 0

Conread position: 331-439
Cow position:
Alignm length: 113
Alignm identity: 97
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 340-428
Cow position:
Alignm length: 91
Alignm identity: 81
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 347-446
Cow position:
Alignm length: 103
Alignm identity: 90
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 11, 0

Show alignments to all cow chromosomes.