Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 9-439 |
| Cow position: | chr21:21914991-21915416 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 11-204 |
| Cow position: | chr21:4184142-4184330 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 136, 29 |
| Conread position: | 11-450 |
| Cow position: | chr21:2540775-2540349 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 63 |
| Conread position: | 14-201 |
| Cow position: | chr21:9870380-9870551 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 14-419 |
| Cow position: | chr21:2710829-2711210 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 41 |
| Conread position: | 14-440 |
| Cow position: | chr21:359677-360095 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 63 |
| Conread position: | 15-449 |
| Cow position: | chr21:23861628-23862063 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 16-315 |
| Cow position: | chr21:6109872-6110168 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 267, 58 |
| Conread position: | 20-433 |
| Cow position: | chr21:9892262-9892655 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 101 |
| Conread position: | 22-238 |
| Cow position: | chr21:2940411-2940193 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 176 |
| Conread position: | 22-431 |
| Cow position: | chr21:34054005-34053609 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 6 |
| Conread position: | 22-434 |
| Cow position: | chr21:1689915-1689493 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 44, 82 |
| Conread position: | 23-196 |
| Cow position: | chr21:24885514-24885688 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 57 |
| Conread position: | 28-256 |
| Cow position: | chr21:37292901-37293118 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 28-436 |
| Cow position: | chr21:23706444-23706849 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 34-443 |
| Cow position: | chr21:23602878-23603277 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 34-444 |
| Cow position: | chr21:25975593-25976011 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 66 |
| Conread position: | 39-398 |
| Cow position: | chr21:20744172-20743820 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 46-451 |
| Cow position: | chr21:27565737-27566149 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 20 |
| Conread position: | 63-444 |
| Cow position: | chr21:4093863-4094237 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 6, 68 |
| Conread position: | 64-444 |
| Cow position: | chr21:21517876-21518254 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 68-416 |
| Cow position: | chr21:12803714-12803347 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 59 |
| Conread position: | 68-446 |
| Cow position: | chr21:11505945-11506330 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 68-449 |
| Cow position: | chr21:11453306-11452920 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 84-450 |
| Cow position: | chr21:23812553-23812916 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 46 |
| Conread position: | 115-421 |
| Cow position: | chr21:217305-217613 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 111 |
| Conread position: | 123-446 |
| Cow position: | chr21:29496-29812 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 135-283 |
| Cow position: | chr21:35596852-35597001 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 135-445 |
| Cow position: | chr21:146351-146663 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 37 |
| Conread position: | 135-445 |
| Cow position: | chr21:2883319-2883006 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 136-351 |
| Cow position: | chr21:2674185-2673971 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 82 |
| Conread position: | 136-436 |
| Cow position: | chr21:31559229-31558928 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 6 |
| Conread position: | 139-445 |
| Cow position: | chr21:48116532-48116840 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 144-283 |
| Cow position: | chr21:2716281-2716143 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 146-275 |
| Cow position: | chr21:2502328-2502458 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-283 |
| Cow position: | chr21:34293453-34293592 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-441 |
| Cow position: | chr21:7267100-7266794 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-445 |
| Cow position: | chr21:3779204-3779509 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 146-445 |
| Cow position: | chr21:30562240-30562538 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 146-445 |
| Cow position: | chr21:40271243-40270940 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 147-443 |
| Cow position: | chr21:33251947-33252238 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 32 |
| Conread position: | 147-445 |
| Cow position: | chr21:27282827-27283126 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 32 |
| Conread position: | 148-398 |
| Cow position: | chr21:38911530-38911781 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 43 |
| Conread position: | 148-446 |
| Cow position: | chr21:4077266-4077569 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 149 |
| Conread position: | 150-439 |
| Cow position: | chr21:13313209-13313501 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 19 |
| Conread position: | 150-445 |
| Cow position: | chr21:10850521-10850815 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 29 |
| Conread position: | 150-445 |
| Cow position: | chr21:30599482-30599187 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr21:35144200-35144497 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-446 |
| Cow position: | chr21:28735672-28735971 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 151-445 |
| Cow position: | chr21:4589547-4589256 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 36 |
| Conread position: | 151-445 |
| Cow position: | chr21:10567113-10567407 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 28 |
| Conread position: | 151-453 |
| Cow position: | chr21:467333-467634 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 115 |
| Conread position: | 154-446 |
| Cow position: | chr21:2416660-2416949 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 89 |
| Conread position: | 163-287 |
| Cow position: | chr21:26638016-26637892 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-374 |
| Cow position: | chr21:6340015-6340228 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 163-444 |
| Cow position: | chr21:2476093-2475808 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 163-446 |
| Cow position: | chr21:2511344-2511630 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 163-449 |
| Cow position: | chr21:11406547-11406258 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 163-449 |
| Cow position: | chr21:37371694-37371983 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 164-381 |
| Cow position: | chr21:46916037-46916251 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 193, 163 |
| Conread position: | 164-431 |
| Cow position: | chr21:26650490-26650761 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 171 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-444 |
| Cow position: | chr21:39425512-39425794 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 116 |
| Conread position: | 164-449 |
| Cow position: | chr21:4091098-4091386 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 164-449 |
| Cow position: | chr21:12055552-12055263 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr21:37046069-37046358 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 194-449 |
| Cow position: | chr21:1287738-1287482 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 92 |
| Conread position: | 200-450 |
| Cow position: | chr21:6622076-6622329 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 116 |
| Conread position: | 200-450 |
| Cow position: | chr21:47949552-47949799 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 110 |
| Conread position: | 202-443 |
| Cow position: | chr21:37148526-37148777 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 78, 16 |
| Conread position: | 205-445 |
| Cow position: | chr21:27070770-27070527 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 206-428 |
| Cow position: | chr21:18819671-18819448 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 187 |
| Conread position: | 214-395 |
| Cow position: | chr21:45786807-45786629 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 216-450 |
| Cow position: | chr21:47941361-47941595 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 86 |
| Conread position: | 217-449 |
| Cow position: | chr21:39087512-39087743 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 141, 41 |
| Conread position: | 220-445 |
| Cow position: | chr21:1192264-1192492 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 259-445 |
| Cow position: | chr21:20174967-20175156 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 265-446 |
| Cow position: | chr21:28255755-28255946 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 285-449 |
| Cow position: | chr21:26637626-26637460 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 295-436 |
| Cow position: | chr21:9870555-9870695 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 18 |
| Conread position: | 301-450 |
| Cow position: | chr21:18817963-18817820 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 129, 32 |
| Conread position: | 305-445 |
| Cow position: | chr21:2502461-2502604 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
Show alignments to all cow chromosomes.