Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 2-254 |
| Cow position: | chr22:1283199-1282947 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 187 |
| Conread position: | 11-195 |
| Cow position: | chr22:8740304-8740137 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 11-283 |
| Cow position: | chr22:44610045-44610298 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 11-418 |
| Cow position: | chr22:1322265-1322661 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 51 |
| Conread position: | 11-436 |
| Cow position: | chr22:3306264-3305843 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 63 |
| Conread position: | 11-438 |
| Cow position: | chr22:23853798-23854215 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 113 |
| Conread position: | 11-450 |
| Cow position: | chr22:1269654-1269225 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 49 |
| Conread position: | 11-450 |
| Cow position: | chr22:13917972-13918406 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 44 |
| Conread position: | 14-224 |
| Cow position: | chr22:41419232-41419034 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 133, 29 |
| Conread position: | 14-450 |
| Cow position: | chr22:35907256-35906825 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 108 |
| Conread position: | 15-446 |
| Cow position: | chr22:6503007-6502571 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 19-450 |
| Cow position: | chr22:37132574-37132992 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 22-447 |
| Cow position: | chr22:1806019-1806427 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 224, 29 |
| Conread position: | 23-264 |
| Cow position: | chr22:44476022-44476254 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 23-283 |
| Cow position: | chr22:2395893-2395632 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 43, 76 |
| Conread position: | 23-442 |
| Cow position: | chr22:11782010-11781589 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 47 |
| Conread position: | 23-446 |
| Cow position: | chr22:11031902-11032315 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 100 |
| Conread position: | 26-291 |
| Cow position: | chr22:46522381-46522117 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 123, 48 |
| Conread position: | 28-387 |
| Cow position: | chr22:13674649-13674295 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 29-268 |
| Cow position: | chr22:310547-310771 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 29-446 |
| Cow position: | chr22:15956015-15955611 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 93 |
| Conread position: | 31-444 |
| Cow position: | chr22:36552289-36551895 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 278 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 31-449 |
| Cow position: | chr22:36580644-36580236 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 53 |
| Conread position: | 47-447 |
| Cow position: | chr22:36269402-36269798 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 19 |
| Conread position: | 68-326 |
| Cow position: | chr22:44490064-44490324 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 68-444 |
| Cow position: | chr22:27309596-27309217 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 68-449 |
| Cow position: | chr22:3278177-3277791 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 110-436 |
| Cow position: | chr22:34599626-34599952 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 186 |
| Conread position: | 129-445 |
| Cow position: | chr22:19143444-19143124 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 136-445 |
| Cow position: | chr22:36861276-36860966 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 6 |
| Conread position: | 139-326 |
| Cow position: | chr22:13773152-13773338 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 145-445 |
| Cow position: | chr22:18816122-18815818 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 146-311 |
| Cow position: | chr22:1522276-1522441 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 138 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-444 |
| Cow position: | chr22:46630785-46630483 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 146-445 |
| Cow position: | chr22:560440-560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 146-445 |
| Cow position: | chr22:36184021-36184317 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 112 |
| Conread position: | 146-446 |
| Cow position: | chr22:525428-525126 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 146-450 |
| Cow position: | chr22:37072813-37072513 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 113 |
| Conread position: | 147-371 |
| Cow position: | chr22:15851580-15851805 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 214 |
| Conread position: | 147-445 |
| Cow position: | chr22:15313683-15313389 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 33 |
| Conread position: | 147-445 |
| Cow position: | chr22:17328473-17328172 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 148-283 |
| Cow position: | chr22:36533474-36533337 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 148-424 |
| Cow position: | chr22:44352710-44352437 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 39 |
| Conread position: | 149-446 |
| Cow position: | chr22:44369363-44369065 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 104 |
| Conread position: | 149-450 |
| Cow position: | chr22:326902-326602 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 128 |
| Conread position: | 150-443 |
| Cow position: | chr22:44396713-44397008 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-444 |
| Cow position: | chr22:39469252-39468955 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 30 |
| Conread position: | 150-445 |
| Cow position: | chr22:21589595-21589897 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 29 |
| Conread position: | 150-445 |
| Cow position: | chr22:34168602-34168898 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr22:42991443-42991739 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 19 |
| Conread position: | 150-445 |
| Cow position: | chr22:44934247-44934544 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 19 |
| Conread position: | 150-446 |
| Cow position: | chr22:12731404-12731107 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 18 |
| Conread position: | 151-446 |
| Cow position: | chr22:48004804-48005105 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 145 |
| Conread position: | 152-436 |
| Cow position: | chr22:31334765-31334479 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 27 |
| Conread position: | 152-445 |
| Cow position: | chr22:31313612-31313906 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 27 |
| Conread position: | 154-443 |
| Cow position: | chr22:5941015-5940730 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 131, 21 |
| Conread position: | 161-445 |
| Cow position: | chr22:1520734-1520455 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 151 |
| Conread position: | 162-443 |
| Cow position: | chr22:5233007-5232722 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 162-450 |
| Cow position: | chr22:8739942-8739647 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 163-449 |
| Cow position: | chr22:35672080-35671791 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 163-449 |
| Cow position: | chr22:46581311-46581025 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 19 |
| Conread position: | 164-443 |
| Cow position: | chr22:16814162-16814445 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-444 |
| Cow position: | chr22:1879069-1879352 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 94 |
| Conread position: | 164-449 |
| Cow position: | chr22:537377-537664 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 63 |
| Conread position: | 164-449 |
| Cow position: | chr22:10909557-10909270 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 96 |
| Conread position: | 164-449 |
| Cow position: | chr22:18027555-18027845 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr22:24950372-24950661 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr22:27284307-27284596 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 124 |
| Conread position: | 170-449 |
| Cow position: | chr22:693906-694189 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 170-449 |
| Cow position: | chr22:20240559-20240279 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 81 |
| Conread position: | 173-449 |
| Cow position: | chr22:6020949-6021226 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 246 |
| Conread position: | 176-412 |
| Cow position: | chr22:36275724-36275962 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 203-367 |
| Cow position: | chr22:5932510-5932344 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 98, 147 |
| Conread position: | 209-443 |
| Cow position: | chr22:5698546-5698322 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 149, 28 |
| Conread position: | 209-445 |
| Cow position: | chr22:14208087-14207849 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 145, 138 |
| Conread position: | 228-444 |
| Cow position: | chr22:35942436-35942221 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 131, 32 |
| Conread position: | 266-449 |
| Cow position: | chr22:14629796-14629982 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 283-449 |
| Cow position: | chr22:42988958-42989127 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 311-449 |
| Cow position: | chr22:44491457-44491598 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 320-445 |
| Cow position: | chr22:44457488-44457616 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 325-449 |
| Cow position: | chr22:11640185-11640058 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.