Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 14-446 |
| Cow position: | chr23:16615297-16614870 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 127 |
| Conread position: | 15-237 |
| Cow position: | chr23:31650074-31649864 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 20-446 |
| Cow position: | chr23:27169278-27169702 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 137, 29 |
| Conread position: | 21-292 |
| Cow position: | chr23:22875160-22874916 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 22-419 |
| Cow position: | chr23:17185831-17186232 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 22-448 |
| Cow position: | chr23:7353101-7353491 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 275 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 22-449 |
| Cow position: | chr23:7046512-7046079 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 31 |
| Conread position: | 23-273 |
| Cow position: | chr23:19331866-19331620 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 23-449 |
| Cow position: | chr23:4752753-4753161 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 47 |
| Conread position: | 25-436 |
| Cow position: | chr23:14948596-14948187 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 27-449 |
| Cow position: | chr23:2341240-2341661 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 28-443 |
| Cow position: | chr23:26836816-26837218 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 46 |
| Conread position: | 34-444 |
| Cow position: | chr23:15877604-15877208 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 31 |
| Conread position: | 39-428 |
| Cow position: | chr23:1402332-1401947 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 27 |
| Conread position: | 40-373 |
| Cow position: | chr23:9545743-9546069 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 92-443 |
| Cow position: | chr23:13509858-13510220 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 320 |
| Conread position: | 99-407 |
| Cow position: | chr23:29141010-29141313 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 107, 26 |
| Conread position: | 115-432 |
| Cow position: | chr23:25683807-25683486 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 261 |
| Conread position: | 121-445 |
| Cow position: | chr23:20155974-20155648 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 58 |
| Conread position: | 136-445 |
| Cow position: | chr23:27399760-27400067 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 37 |
| Conread position: | 139-445 |
| Cow position: | chr23:4640366-4640062 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 140-444 |
| Cow position: | chr23:19950333-19950027 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 66 |
| Conread position: | 142-445 |
| Cow position: | chr23:2757857-2758162 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 37 |
| Conread position: | 145-445 |
| Cow position: | chr23:14878364-14878667 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 167 |
| Conread position: | 146-273 |
| Cow position: | chr23:5778822-5778694 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 146-371 |
| Cow position: | chr23:2026854-2026626 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 146-374 |
| Cow position: | chr23:2574800-2575029 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 146-405 |
| Cow position: | chr23:22146989-22146727 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-425 |
| Cow position: | chr23:4510342-4510616 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 149 |
| Conread position: | 146-436 |
| Cow position: | chr23:31594983-31594693 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 146-445 |
| Cow position: | chr23:4888938-4889245 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 146-446 |
| Cow position: | chr23:2781949-2781646 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-446 |
| Cow position: | chr23:16616581-16616277 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 147-441 |
| Cow position: | chr23:15219630-15219338 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 147-445 |
| Cow position: | chr23:2716657-2716956 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 61 |
| Conread position: | 147-445 |
| Cow position: | chr23:15177337-15177638 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 147-446 |
| Cow position: | chr23:14974298-14973995 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 197 |
| Conread position: | 148-266 |
| Cow position: | chr23:12887642-12887525 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 148-446 |
| Cow position: | chr23:5874374-5874087 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 74 |
| Conread position: | 149-449 |
| Cow position: | chr23:17786059-17785757 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 14 |
| Conread position: | 149-450 |
| Cow position: | chr23:4434721-4435025 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 149-450 |
| Cow position: | chr23:29452048-29451751 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 132 |
| Conread position: | 150-294 |
| Cow position: | chr23:30636030-30635888 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 150-382 |
| Cow position: | chr23:15525881-15526116 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 150-436 |
| Cow position: | chr23:11778759-11779047 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr23:14965481-14965184 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 151-445 |
| Cow position: | chr23:967078-966774 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 151-445 |
| Cow position: | chr23:28913665-28913956 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 28 |
| Conread position: | 151-445 |
| Cow position: | chr23:36031105-36030810 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 108 |
| Conread position: | 152-450 |
| Cow position: | chr23:3014663-3014966 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 154-444 |
| Cow position: | chr23:20302478-20302761 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 240 |
| Conread position: | 156-283 |
| Cow position: | chr23:8980064-8979936 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 163-449 |
| Cow position: | chr23:31447091-31447380 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 164-385 |
| Cow position: | chr23:4360106-4360328 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 163 |
| Conread position: | 164-444 |
| Cow position: | chr23:28217566-28217850 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 169-444 |
| Cow position: | chr23:2312957-2312679 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 122 |
| Conread position: | 170-439 |
| Cow position: | chr23:19489831-19490103 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 170-449 |
| Cow position: | chr23:23830249-23830525 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 89 |
| Conread position: | 203-445 |
| Cow position: | chr23:4817338-4817583 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 206-449 |
| Cow position: | chr23:29403616-29403373 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 149, 113 |
| Conread position: | 208-446 |
| Cow position: | chr23:1024696-1024449 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 209-445 |
| Cow position: | chr23:2794907-2794670 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 37 |
| Conread position: | 250-429 |
| Cow position: | chr23:28077736-28077915 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 83 |
| Conread position: | 250-446 |
| Cow position: | chr23:27970903-27971102 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 250-446 |
| Cow position: | chr23:28108025-28108218 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 105, 143 |
| Conread position: | 250-450 |
| Cow position: | chr23:28025032-28025235 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 254-446 |
| Cow position: | chr23:28368153-28367958 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 281-445 |
| Cow position: | chr23:7364337-7364503 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 86 |
| Conread position: | 281-447 |
| Cow position: | chr23:22874788-22874620 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 56 |
| Conread position: | 300-449 |
| Cow position: | chr23:619022-618880 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 311-450 |
| Cow position: | chr23:16499021-16498880 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 69 |
| Conread position: | 339-445 |
| Cow position: | chr23:2026627-2026520 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 340-450 |
| Cow position: | chr23:12887523-12887411 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.