Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 6-449 |
| Cow position: | chr24:38637752-38638200 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 45 |
| Conread position: | 11-315 |
| Cow position: | chr24:36708473-36708785 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 73 |
| Conread position: | 11-326 |
| Cow position: | chr24:17313318-17313019 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 11-446 |
| Cow position: | chr24:6336066-6336492 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 179 |
| Conread position: | 11-450 |
| Cow position: | chr24:16648767-16648325 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 11-450 |
| Cow position: | chr24:36559546-36559104 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 14-260 |
| Cow position: | chr24:43889529-43889761 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 129, 61 |
| Conread position: | 14-446 |
| Cow position: | chr24:13302323-13301874 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 84 |
| Conread position: | 14-450 |
| Cow position: | chr24:12206083-12205655 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 18 |
| Conread position: | 15-393 |
| Cow position: | chr24:14280860-14280487 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 268, 57 |
| Conread position: | 20-198 |
| Cow position: | chr24:12797209-12797036 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 141, 45 |
| Conread position: | 22-387 |
| Cow position: | chr24:27734741-27735080 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 258, 44 |
| Conread position: | 22-445 |
| Cow position: | chr24:14333707-14334119 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 42 |
| Conread position: | 23-180 |
| Cow position: | chr24:35870392-35870230 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 23-242 |
| Cow position: | chr24:12568872-12569093 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 23-405 |
| Cow position: | chr24:7090949-7090556 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 28 |
| Conread position: | 23-444 |
| Cow position: | chr24:6538181-6538604 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 23-444 |
| Cow position: | chr24:16472125-16472547 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 51 |
| Conread position: | 28-310 |
| Cow position: | chr24:32332258-32332536 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 130, 38 |
| Conread position: | 28-444 |
| Cow position: | chr24:6669914-6669499 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 42 |
| Conread position: | 28-444 |
| Cow position: | chr24:14872746-14872312 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 132, 103 |
| Conread position: | 32-447 |
| Cow position: | chr24:6048832-6049229 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 383, 31 |
| Conread position: | 41-314 |
| Cow position: | chr24:583501-583212 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 105, 48 |
| Conread position: | 58-450 |
| Cow position: | chr24:12237501-12237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 16 |
| Conread position: | 89-298 |
| Cow position: | chr24:17372107-17371901 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 190, 84 |
| Conread position: | 119-446 |
| Cow position: | chr24:12232651-12232334 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 183 |
| Conread position: | 121-443 |
| Cow position: | chr24:6113851-6113537 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 128-351 |
| Cow position: | chr24:37217349-37217564 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 135-271 |
| Cow position: | chr24:14585419-14585551 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 135-445 |
| Cow position: | chr24:17696635-17696325 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 34 |
| Conread position: | 140-444 |
| Cow position: | chr24:40549210-40549511 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 145 |
| Conread position: | 140-449 |
| Cow position: | chr24:12484981-12484667 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 145-436 |
| Cow position: | chr24:4415179-4414890 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 146-271 |
| Cow position: | chr24:35838271-35838144 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-292 |
| Cow position: | chr24:12162206-12162351 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 146-428 |
| Cow position: | chr24:12130623-12130340 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 146-444 |
| Cow position: | chr24:22971441-22971739 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 146-445 |
| Cow position: | chr24:29187634-29187936 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 146-445 |
| Cow position: | chr24:33933717-33934020 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-450 |
| Cow position: | chr24:9091934-9091626 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 150-445 |
| Cow position: | chr24:12335418-12335113 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 28 |
| Conread position: | 150-445 |
| Cow position: | chr24:19833742-19834039 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 151-445 |
| Cow position: | chr24:148261-147961 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 28 |
| Conread position: | 151-445 |
| Cow position: | chr24:12086556-12086850 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 201 |
| Conread position: | 154-375 |
| Cow position: | chr24:30900771-30900555 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 163-283 |
| Cow position: | chr24:19773482-19773362 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-445 |
| Cow position: | chr24:13188535-13188820 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 164-398 |
| Cow position: | chr24:6434600-6434839 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-443 |
| Cow position: | chr24:14390190-14389910 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 93 |
| Conread position: | 164-444 |
| Cow position: | chr24:5992867-5992581 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr24:6646062-6646351 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr24:33738978-33738688 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr24:43814126-43814414 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 132 |
| Conread position: | 164-449 |
| Cow position: | chr24:44017895-44018184 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 165-444 |
| Cow position: | chr24:7061758-7062040 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 169-449 |
| Cow position: | chr24:6024735-6024454 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 81 |
| Conread position: | 170-387 |
| Cow position: | chr24:8030520-8030739 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 170-449 |
| Cow position: | chr24:9188363-9188084 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 162 |
| Conread position: | 170-449 |
| Cow position: | chr24:22793541-22793827 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 170-449 |
| Cow position: | chr24:29305954-29305671 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 177-355 |
| Cow position: | chr24:16084279-16084101 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-412 |
| Cow position: | chr24:1449638-1449864 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 194-432 |
| Cow position: | chr24:12796815-12796583 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 138 |
| Conread position: | 201-444 |
| Cow position: | chr24:6084471-6084717 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 201-450 |
| Cow position: | chr24:6660095-6659843 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 208-445 |
| Cow position: | chr24:14754594-14754353 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 210-443 |
| Cow position: | chr24:23185053-23184817 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 218-315 |
| Cow position: | chr24:6145851-6145948 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-449 |
| Cow position: | chr24:23505434-23505215 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 165 |
| Conread position: | 256-446 |
| Cow position: | chr24:12110236-12110055 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 174, 31 |
| Conread position: | 259-409 |
| Cow position: | chr24:12569322-12569473 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 99, 62 |
| Conread position: | 280-443 |
| Cow position: | chr24:9544542-9544708 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 280-449 |
| Cow position: | chr24:6328834-6328661 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 288-449 |
| Cow position: | chr24:6059386-6059549 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 308-449 |
| Cow position: | chr24:12700312-12700167 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.