Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 1-131 |
| Cow position: | chr25:19287779-19287649 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 11-375 |
| Cow position: | chr25:18094379-18094733 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 22-354 |
| Cow position: | chr25:23344721-23344384 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 53 |
| Conread position: | 22-446 |
| Cow position: | chr25:11932924-11932494 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 29-282 |
| Cow position: | chr25:20494926-20495172 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 29-434 |
| Cow position: | chr25:17990993-17991384 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 29-450 |
| Cow position: | chr25:24054172-24054588 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 120 |
| Conread position: | 70-443 |
| Cow position: | chr25:18422261-18422631 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 19 |
| Conread position: | 74-326 |
| Cow position: | chr25:33665441-33665193 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 120-443 |
| Cow position: | chr25:27365140-27365463 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 123-450 |
| Cow position: | chr25:18274698-18274364 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 124-443 |
| Cow position: | chr25:16552543-16552225 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 155, 217 |
| Conread position: | 125-313 |
| Cow position: | chr25:9742375-9742565 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 74, 10 |
| Conread position: | 135-445 |
| Cow position: | chr25:34014189-34013873 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 24 |
| Conread position: | 136-436 |
| Cow position: | chr25:26279555-26279846 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 6 |
| Conread position: | 146-256 |
| Cow position: | chr25:14016472-14016584 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 146-443 |
| Cow position: | chr25:8675223-8675523 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 146-443 |
| Cow position: | chr25:9544368-9544667 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 146-446 |
| Cow position: | chr25:24659560-24659859 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 147-440 |
| Cow position: | chr25:17560329-17560033 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 184 |
| Conread position: | 149-433 |
| Cow position: | chr25:18303711-18304001 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 20 |
| Conread position: | 150-445 |
| Cow position: | chr25:18889702-18889405 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr25:34346704-34346408 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 151-445 |
| Cow position: | chr25:12942386-12942090 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 28 |
| Conread position: | 152-283 |
| Cow position: | chr25:18027131-18026999 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-450 |
| Cow position: | chr25:13781344-13781644 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 298 |
| Conread position: | 163-446 |
| Cow position: | chr25:17589236-17588949 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 164-315 |
| Cow position: | chr25:35362111-35361959 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-444 |
| Cow position: | chr25:18194780-18194498 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 197 |
| Conread position: | 164-449 |
| Cow position: | chr25:6172221-6172510 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr25:13550712-13550423 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-449 |
| Cow position: | chr25:27022248-27021962 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 170 |
| Conread position: | 170-449 |
| Cow position: | chr25:32580290-32580571 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 87 |
| Conread position: | 173-444 |
| Cow position: | chr25:19917412-19917686 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 182-454 |
| Cow position: | chr25:33244607-33244871 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 232, 46 |
| Conread position: | 184-445 |
| Cow position: | chr25:26879538-26879798 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 24 |
| Conread position: | 207-445 |
| Cow position: | chr25:22147907-22148146 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 91 |
| Conread position: | 208-312 |
| Cow position: | chr25:25507039-25507142 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 209-436 |
| Cow position: | chr25:20775556-20775326 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 211-434 |
| Cow position: | chr25:24217058-24216835 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 146, 70 |
| Conread position: | 218-444 |
| Cow position: | chr25:40918780-40918552 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 62, 126 |
| Conread position: | 223-436 |
| Cow position: | chr25:14958466-14958250 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 193 |
| Conread position: | 231-435 |
| Cow position: | chr25:18449648-18449853 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 126, 31 |
| Conread position: | 231-450 |
| Cow position: | chr25:18175670-18175888 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 55 |
| Conread position: | 240-444 |
| Cow position: | chr25:39558020-39557818 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 117, 25 |
| Conread position: | 248-445 |
| Cow position: | chr25:20630040-20630240 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 328-445 |
| Cow position: | chr25:25507190-25507310 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 330-450 |
| Cow position: | chr25:33664732-33664609 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
Show alignments to all cow chromosomes.