Cow genome map
| Conread name: | Ss1.1-rcbl0_011794.5 |
| Conread position: | 11-132 |
| Cow position: | chr28:11356874-11356752 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 11-436 |
| Cow position: | chr28:5797940-5798347 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 41 |
| Conread position: | 14-395 |
| Cow position: | chr28:10617638-10617268 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 100 |
| Conread position: | 15-428 |
| Cow position: | chr28:10647197-10646801 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 128 |
| Conread position: | 15-450 |
| Cow position: | chr28:5813195-5813626 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 19 |
| Conread position: | 19-308 |
| Cow position: | chr28:21359522-21359810 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 20-450 |
| Cow position: | chr28:7789757-7789336 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 31 |
| Conread position: | 21-199 |
| Cow position: | chr28:24704423-24704602 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 21-446 |
| Cow position: | chr28:2989048-2988630 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 39 |
| Conread position: | 22-235 |
| Cow position: | chr28:15586296-15586514 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 212 |
| Conread position: | 22-257 |
| Cow position: | chr28:32330510-32330283 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 22-436 |
| Cow position: | chr28:31140597-31140181 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 23-198 |
| Cow position: | chr28:10462557-10462382 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 122, 45 |
| Conread position: | 23-256 |
| Cow position: | chr28:29092379-29092146 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-447 |
| Cow position: | chr28:14913702-14914131 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 151 |
| Conread position: | 28-441 |
| Cow position: | chr28:10497821-10497414 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 47 |
| Conread position: | 28-444 |
| Cow position: | chr28:10230021-10229610 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 30-241 |
| Cow position: | chr28:8721152-8720946 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 22, 155 |
| Conread position: | 30-450 |
| Cow position: | chr28:6656324-6655898 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 290 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 112, 15 |
| Conread position: | 33-444 |
| Cow position: | chr28:5801190-5801604 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 158, 77 |
| Conread position: | 39-224 |
| Cow position: | chr28:14946847-14947024 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 39-453 |
| Cow position: | chr28:22233200-22232786 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 16 |
| Conread position: | 41-449 |
| Cow position: | chr28:26489512-26489918 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 56-446 |
| Cow position: | chr28:3020518-3020141 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 73-428 |
| Cow position: | chr28:10071527-10071876 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 51 |
| Conread position: | 119-373 |
| Cow position: | chr28:12229909-12229662 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 233, 43 |
| Conread position: | 134-445 |
| Cow position: | chr28:10581688-10581372 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 135-436 |
| Cow position: | chr28:22260851-22260548 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 44 |
| Conread position: | 139-445 |
| Cow position: | chr28:2083898-2084204 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 41 |
| Conread position: | 145-436 |
| Cow position: | chr28:7740792-7741078 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 14 |
| Conread position: | 145-445 |
| Cow position: | chr28:782705-783003 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 27 |
| Conread position: | 146-278 |
| Cow position: | chr28:9954442-9954571 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 146-284 |
| Cow position: | chr28:7901671-7901810 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 15, 135 |
| Conread position: | 146-423 |
| Cow position: | chr28:29820043-29820322 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 146-436 |
| Cow position: | chr28:17666988-17666696 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 146-445 |
| Cow position: | chr28:7002301-7002602 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 27 |
| Conread position: | 146-445 |
| Cow position: | chr28:12150613-12150915 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 147-428 |
| Cow position: | chr28:33258952-33259233 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 147-445 |
| Cow position: | chr28:1505177-1505477 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 32 |
| Conread position: | 147-445 |
| Cow position: | chr28:26425938-26425639 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 15 |
| Conread position: | 147-446 |
| Cow position: | chr28:1387092-1386790 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 35 |
| Conread position: | 149-453 |
| Cow position: | chr28:17388797-17389102 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 30 |
| Conread position: | 150-445 |
| Cow position: | chr28:1167566-1167270 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 22 |
| Conread position: | 150-445 |
| Cow position: | chr28:1814552-1814257 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr28:5113983-5113686 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr28:5566460-5566761 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 29 |
| Conread position: | 150-445 |
| Cow position: | chr28:5751390-5751097 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 29 |
| Conread position: | 150-445 |
| Cow position: | chr28:12409913-12409616 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 30 |
| Conread position: | 150-445 |
| Cow position: | chr28:13460285-13460579 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 29 |
| Conread position: | 150-445 |
| Cow position: | chr28:33252627-33252917 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 150-445 |
| Cow position: | chr28:34594294-34594590 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 29 |
| Conread position: | 150-446 |
| Cow position: | chr28:32792065-32791767 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 29 |
| Conread position: | 151-326 |
| Cow position: | chr28:14705355-14705181 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 152-281 |
| Cow position: | chr28:24652805-24652671 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 152-445 |
| Cow position: | chr28:5937793-5938091 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 27 |
| Conread position: | 163-301 |
| Cow position: | chr28:30805367-30805230 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 163-443 |
| Cow position: | chr28:6780013-6779733 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 163-449 |
| Cow position: | chr28:1953450-1953741 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 0 |
| Conread position: | 164-428 |
| Cow position: | chr28:485242-484975 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 164-444 |
| Cow position: | chr28:7822578-7822862 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 164-449 |
| Cow position: | chr28:14750867-14751155 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 170-449 |
| Cow position: | chr28:6538934-6538652 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 172-455 |
| Cow position: | chr28:24667946-24668221 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 87 |
| Conread position: | 175-449 |
| Cow position: | chr28:2724590-2724313 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 184-485 |
| Cow position: | chr28:8720950-8720645 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 257 |
| Conread position: | 187-445 |
| Cow position: | chr28:3191895-3191644 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 72 |
| Conread position: | 199-383 |
| Cow position: | chr28:24588446-24588634 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 199-444 |
| Cow position: | chr28:24589208-24589458 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 208-445 |
| Cow position: | chr28:18520074-18519838 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 108 |
| Conread position: | 209-439 |
| Cow position: | chr28:14195320-14195086 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 170 |
| Conread position: | 211-399 |
| Cow position: | chr28:24704874-24705057 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 146, 71 |
| Conread position: | 224-450 |
| Cow position: | chr28:5765150-5765370 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 32 |
| Conread position: | 228-396 |
| Cow position: | chr28:7882006-7881837 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 128, 77 |
| Conread position: | 242-397 |
| Cow position: | chr28:7880928-7881085 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 271-445 |
| Cow position: | chr28:8379268-8379444 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 84, 130 |
| Conread position: | 301-446 |
| Cow position: | chr28:21359940-21360088 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 329-445 |
| Cow position: | chr28:14704897-14704781 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 101, 62 |
| Conread position: | 340-428 |
| Cow position: | chr28:15683789-15683879 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 79 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.