Cow genome map
Conread name: | Ss1.1-rcbl0_011794.5 |
Conread position: | 11-445 |
Cow position: | chr29:14085982-14085558 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 113 |
Conread position: | 11-450 |
Cow position: | chr29:105173-105618 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 276, 115 |
Conread position: | 15-250 |
Cow position: | chr29:9617438-9617671 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 170 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 108, 49 |
Conread position: | 15-273 |
Cow position: | chr29:31488167-31488430 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 197 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 44, 109 |
Conread position: | 15-446 |
Cow position: | chr29:802786-802356 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 87 |
Conread position: | 16-444 |
Cow position: | chr29:8062340-8061920 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 50 |
Conread position: | 20-176 |
Cow position: | chr29:17663100-17663258 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 90 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 129, 0 |
Conread position: | 22-434 |
Cow position: | chr29:15949395-15948984 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 55 |
Conread position: | 22-448 |
Cow position: | chr29:3177423-3177020 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 283 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 45, 53 |
Conread position: | 23-427 |
Cow position: | chr29:9854347-9853938 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 284 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 31, 46 |
Conread position: | 28-256 |
Cow position: | chr29:43874383-43874156 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 158 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 82, 34 |
Conread position: | 28-450 |
Cow position: | chr29:36598438-36598007 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 282 |
Alignm E-value: | 9e-35 |
Alignm gaps (pig, cow): | 29, 55 |
Conread position: | 62-445 |
Cow position: | chr29:39079521-39079134 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 87 |
Conread position: | 64-441 |
Cow position: | chr29:5982504-5982144 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 293, 20 |
Conread position: | 101-444 |
Cow position: | chr29:16016547-16016204 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 237 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 31, 6 |
Conread position: | 102-445 |
Cow position: | chr29:19598021-19597682 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 227 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 187, 67 |
Conread position: | 111-437 |
Cow position: | chr29:6212771-6213105 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 234 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 47, 58 |
Conread position: | 135-409 |
Cow position: | chr29:410259-409986 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 44 |
Conread position: | 135-445 |
Cow position: | chr29:2841109-2840799 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 115 |
Conread position: | 136-429 |
Cow position: | chr29:32540074-32540369 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 6 |
Conread position: | 139-441 |
Cow position: | chr29:10823701-10823395 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 205 |
Conread position: | 139-445 |
Cow position: | chr29:14586190-14586494 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 42 |
Conread position: | 139-445 |
Cow position: | chr29:19653376-19653693 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 42 |
Conread position: | 140-445 |
Cow position: | chr29:45459987-45460293 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 39 |
Conread position: | 145-271 |
Cow position: | chr29:16770397-16770522 (view UCSC Genome Browser custom track) |
Alignm length: | 127 |
Alignm identity: | 97 |
Alignm E-value: | 7e-22 |
Alignm gaps (pig, cow): | 90, 0 |
Conread position: | 146-271 |
Cow position: | chr29:34300494-34300369 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 101 |
Alignm E-value: | 8e-23 |
Alignm gaps (pig, cow): | 16, 116 |
Conread position: | 146-271 |
Cow position: | chr29:35196939-35197066 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 99 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 146-283 |
Cow position: | chr29:12796107-12795971 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 107 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 16, 50 |
Conread position: | 146-283 |
Cow position: | chr29:21543094-21542955 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 111 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 146-283 |
Cow position: | chr29:27040497-27040358 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 105 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 146-387 |
Cow position: | chr29:42650540-42650785 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 146-445 |
Cow position: | chr29:2690175-2690478 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 35 |
Conread position: | 146-445 |
Cow position: | chr29:5957879-5958175 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 28 |
Conread position: | 146-445 |
Cow position: | chr29:16022805-16023110 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 35 |
Conread position: | 146-445 |
Cow position: | chr29:25932269-25931966 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 223 |
Conread position: | 146-445 |
Cow position: | chr29:26164547-26164245 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 34 |
Conread position: | 146-445 |
Cow position: | chr29:42802400-42802704 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 146-450 |
Cow position: | chr29:21426755-21426447 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 147-436 |
Cow position: | chr29:9643482-9643191 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 29 |
Conread position: | 150-427 |
Cow position: | chr29:6266220-6265941 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 29 |
Conread position: | 150-436 |
Cow position: | chr29:10647970-10647682 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 23 |
Conread position: | 150-439 |
Cow position: | chr29:7430938-7430647 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 206, 29 |
Conread position: | 150-441 |
Cow position: | chr29:2100126-2100419 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 23 |
Conread position: | 150-444 |
Cow position: | chr29:45587087-45586791 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 29 |
Conread position: | 150-445 |
Cow position: | chr29:48199-47895 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 22 |
Conread position: | 150-445 |
Cow position: | chr29:19622966-19622670 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 29 |
Conread position: | 150-445 |
Cow position: | chr29:20251440-20251736 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 23 |
Conread position: | 150-445 |
Cow position: | chr29:23976121-23976412 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 29 |
Conread position: | 150-445 |
Cow position: | chr29:34799529-34799233 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 29 |
Conread position: | 150-445 |
Cow position: | chr29:40502703-40502406 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 19 |
Conread position: | 150-445 |
Cow position: | chr29:43322835-43323131 (view UCSC Genome Browser custom track) |
Alignm length: | 299 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 23 |
Conread position: | 150-449 |
Cow position: | chr29:15968588-15968286 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 207, 0 |
Conread position: | 152-428 |
Cow position: | chr29:13582343-13582620 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 218 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 196 |
Conread position: | 152-445 |
Cow position: | chr29:38227263-38227557 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 27 |
Conread position: | 164-444 |
Cow position: | chr29:31181701-31181974 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 96 |
Conread position: | 164-449 |
Cow position: | chr29:610326-610041 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 137 |
Conread position: | 164-449 |
Cow position: | chr29:669771-669483 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 164-449 |
Cow position: | chr29:15894564-15894275 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 164-449 |
Cow position: | chr29:27980633-27980347 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 43 |
Conread position: | 164-450 |
Cow position: | chr29:19885356-19885644 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 221 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 119 |
Conread position: | 169-449 |
Cow position: | chr29:35297161-35297445 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 0 |
Conread position: | 170-444 |
Cow position: | chr29:7844624-7844901 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 0 |
Conread position: | 170-444 |
Cow position: | chr29:34925772-34926048 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 177 |
Conread position: | 170-445 |
Cow position: | chr29:16110709-16110986 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 81 |
Conread position: | 170-449 |
Cow position: | chr29:27250049-27249768 (view UCSC Genome Browser custom track) |
Alignm length: | 283 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 81 |
Conread position: | 175-449 |
Cow position: | chr29:18856645-18856369 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 182, 168 |
Conread position: | 194-450 |
Cow position: | chr29:2950945-2950690 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 189 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 45, 27 |
Conread position: | 206-437 |
Cow position: | chr29:21459618-21459863 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 168 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 231-446 |
Cow position: | chr29:9619777-9619995 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 168 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 70, 28 |
Conread position: | 237-432 |
Cow position: | chr29:3045993-3046189 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 142 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 118, 61 |
Conread position: | 252-433 |
Cow position: | chr29:8775861-8775680 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 129 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 104, 27 |
Conread position: | 253-445 |
Cow position: | chr29:251150-251349 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 155 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 104, 0 |
Conread position: | 267-431 |
Cow position: | chr29:4057307-4057468 (view UCSC Genome Browser custom track) |
Alignm length: | 167 |
Alignm identity: | 122 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 90, 19 |
Conread position: | 308-443 |
Cow position: | chr29:32559324-32559186 (view UCSC Genome Browser custom track) |
Alignm length: | 139 |
Alignm identity: | 110 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 350-446 |
Cow position: | chr29:16173854-16173755 (view UCSC Genome Browser custom track) |
Alignm length: | 100 |
Alignm identity: | 87 |
Alignm E-value: | 8e-24 |
Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.