Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 11-445
Cow position: chr29:14085982-14085558 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 113

Conread position: 11-450
Cow position: chr29:105173-105618 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 115

Conread position: 15-250
Cow position: chr29:9617438-9617671 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 108, 49

Conread position: 15-273
Cow position: chr29:31488167-31488430 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 197
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 44, 109

Conread position: 15-446
Cow position: chr29:802786-802356 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 87

Conread position: 16-444
Cow position: chr29:8062340-8061920 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 50

Conread position: 20-176
Cow position: chr29:17663100-17663258 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 90
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 129, 0

Conread position: 22-434
Cow position: chr29:15949395-15948984 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 55

Conread position: 22-448
Cow position: chr29:3177423-3177020 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 283
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 45, 53

Conread position: 23-427
Cow position: chr29:9854347-9853938 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 284
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 31, 46

Conread position: 28-256
Cow position: chr29:43874383-43874156 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 82, 34

Conread position: 28-450
Cow position: chr29:36598438-36598007 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 282
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 29, 55

Conread position: 62-445
Cow position: chr29:39079521-39079134 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 87

Conread position: 64-441
Cow position: chr29:5982504-5982144 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 20

Conread position: 101-444
Cow position: chr29:16016547-16016204 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 237
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 31, 6

Conread position: 102-445
Cow position: chr29:19598021-19597682 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 227
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 187, 67

Conread position: 111-437
Cow position: chr29:6212771-6213105 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 47, 58

Conread position: 135-409
Cow position: chr29:410259-409986 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 44

Conread position: 135-445
Cow position: chr29:2841109-2840799 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 115

Conread position: 136-429
Cow position: chr29:32540074-32540369 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 139-441
Cow position: chr29:10823701-10823395 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 205

Conread position: 139-445
Cow position: chr29:14586190-14586494 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 139-445
Cow position: chr29:19653376-19653693 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 140-445
Cow position: chr29:45459987-45460293 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 39

Conread position: 145-271
Cow position: chr29:16770397-16770522 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 146-271
Cow position: chr29:34300494-34300369 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 101
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 16, 116

Conread position: 146-271
Cow position: chr29:35196939-35197066 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 146-283
Cow position: chr29:12796107-12795971 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 50

Conread position: 146-283
Cow position: chr29:21543094-21542955 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 146-283
Cow position: chr29:27040497-27040358 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 146-387
Cow position: chr29:42650540-42650785 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 146-445
Cow position: chr29:2690175-2690478 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 35

Conread position: 146-445
Cow position: chr29:5957879-5958175 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 28

Conread position: 146-445
Cow position: chr29:16022805-16023110 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 35

Conread position: 146-445
Cow position: chr29:25932269-25931966 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 223

Conread position: 146-445
Cow position: chr29:26164547-26164245 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-445
Cow position: chr29:42802400-42802704 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 146-450
Cow position: chr29:21426755-21426447 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 147-436
Cow position: chr29:9643482-9643191 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 150-427
Cow position: chr29:6266220-6265941 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 29

Conread position: 150-436
Cow position: chr29:10647970-10647682 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 23

Conread position: 150-439
Cow position: chr29:7430938-7430647 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 29

Conread position: 150-441
Cow position: chr29:2100126-2100419 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 23

Conread position: 150-444
Cow position: chr29:45587087-45586791 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 29

Conread position: 150-445
Cow position: chr29:48199-47895 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 22

Conread position: 150-445
Cow position: chr29:19622966-19622670 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 29

Conread position: 150-445
Cow position: chr29:20251440-20251736 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 23

Conread position: 150-445
Cow position: chr29:23976121-23976412 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 29

Conread position: 150-445
Cow position: chr29:34799529-34799233 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 29

Conread position: 150-445
Cow position: chr29:40502703-40502406 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 19

Conread position: 150-445
Cow position: chr29:43322835-43323131 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 23

Conread position: 150-449
Cow position: chr29:15968588-15968286 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 152-428
Cow position: chr29:13582343-13582620 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 196

Conread position: 152-445
Cow position: chr29:38227263-38227557 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 27

Conread position: 164-444
Cow position: chr29:31181701-31181974 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 96

Conread position: 164-449
Cow position: chr29:610326-610041 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 137

Conread position: 164-449
Cow position: chr29:669771-669483 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr29:15894564-15894275 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr29:27980633-27980347 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 43

Conread position: 164-450
Cow position: chr29:19885356-19885644 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 119

Conread position: 169-449
Cow position: chr29:35297161-35297445 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 170-444
Cow position: chr29:7844624-7844901 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-444
Cow position: chr29:34925772-34926048 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 177

Conread position: 170-445
Cow position: chr29:16110709-16110986 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 81

Conread position: 170-449
Cow position: chr29:27250049-27249768 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 81

Conread position: 175-449
Cow position: chr29:18856645-18856369 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 168

Conread position: 194-450
Cow position: chr29:2950945-2950690 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 27

Conread position: 206-437
Cow position: chr29:21459618-21459863 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 231-446
Cow position: chr29:9619777-9619995 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 70, 28

Conread position: 237-432
Cow position: chr29:3045993-3046189 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 118, 61

Conread position: 252-433
Cow position: chr29:8775861-8775680 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 104, 27

Conread position: 253-445
Cow position: chr29:251150-251349 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 155
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 267-431
Cow position: chr29:4057307-4057468 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 19

Conread position: 308-443
Cow position: chr29:32559324-32559186 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 350-446
Cow position: chr29:16173854-16173755 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.