Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 12-443
Cow position: chr4:64984218-64984639 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 286
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 157, 21

Conread position: 14-446
Cow position: chr4:60264289-60263863 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 66

Conread position: 14-450
Cow position: chr4:46664383-46664820 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 52

Conread position: 15-428
Cow position: chr4:14374807-14374392 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 6

Conread position: 15-436
Cow position: chr4:34184638-34184244 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 41

Conread position: 15-446
Cow position: chr4:6212040-6211612 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 340, 68

Conread position: 16-377
Cow position: chr4:11385632-11385969 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 259
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 248, 39

Conread position: 16-446
Cow position: chr4:11837774-11837351 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 87, 15

Conread position: 22-445
Cow position: chr4:45876791-45876370 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 296
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 197, 44

Conread position: 22-450
Cow position: chr4:39271522-39271082 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 122, 46

Conread position: 23-315
Cow position: chr4:14549870-14550155 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 221, 13

Conread position: 28-444
Cow position: chr4:54158539-54158926 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 282
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 181, 99

Conread position: 28-447
Cow position: chr4:44925643-44925218 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 297
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 110

Conread position: 29-439
Cow position: chr4:19093289-19093715 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 288
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 33, 47

Conread position: 30-436
Cow position: chr4:38929318-38929709 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 262
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 327, 73

Conread position: 32-450
Cow position: chr4:51043371-51042953 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 38-443
Cow position: chr4:968765-968351 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 268
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 129, 31

Conread position: 39-445
Cow position: chr4:28831246-28831640 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 110

Conread position: 41-445
Cow position: chr4:31669165-31669572 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 16

Conread position: 58-436
Cow position: chr4:43454585-43454960 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 263
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 18, 12

Conread position: 62-449
Cow position: chr4:13869945-13870314 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 265
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 18, 81

Conread position: 68-449
Cow position: chr4:32212077-32212465 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 78

Conread position: 74-445
Cow position: chr4:15194541-15194904 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 15

Conread position: 92-450
Cow position: chr4:14821603-14821251 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 55

Conread position: 122-423
Cow position: chr4:60112399-60112111 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 201
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 235, 8

Conread position: 124-424
Cow position: chr4:12607684-12607394 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 85

Conread position: 131-445
Cow position: chr4:26886875-26886561 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 10

Conread position: 136-445
Cow position: chr4:25599512-25599202 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 26

Conread position: 136-448
Cow position: chr4:16359870-16360185 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 139-399
Cow position: chr4:33121040-33121303 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 35

Conread position: 139-445
Cow position: chr4:43881099-43881409 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 42

Conread position: 140-449
Cow position: chr4:100950-100636 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 140-449
Cow position: chr4:16326792-16326477 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 144-445
Cow position: chr4:12241220-12240915 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 35

Conread position: 145-445
Cow position: chr4:44725080-44725384 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 146-281
Cow position: chr4:66925993-66926130 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 16, 127

Conread position: 146-445
Cow position: chr4:17926257-17925953 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 35

Conread position: 146-445
Cow position: chr4:18516894-18517193 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 170

Conread position: 146-445
Cow position: chr4:31565306-31565008 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-445
Cow position: chr4:36896367-36896668 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 146-445
Cow position: chr4:48026394-48026699 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 147-441
Cow position: chr4:355908-356205 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 150-393
Cow position: chr4:33493828-33494072 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-398
Cow position: chr4:12587302-12587551 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 23

Conread position: 150-445
Cow position: chr4:6490361-6490066 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 29

Conread position: 150-445
Cow position: chr4:43319643-43319346 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 22

Conread position: 150-445
Cow position: chr4:45049295-45048998 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 22

Conread position: 151-443
Cow position: chr4:4176795-4177087 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 129, 12

Conread position: 152-444
Cow position: chr4:18190403-18190698 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 152-445
Cow position: chr4:41120309-41120616 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 27

Conread position: 161-355
Cow position: chr4:27333441-27333635 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 163-444
Cow position: chr4:41954483-41954766 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 44

Conread position: 164-347
Cow position: chr4:603002-603187 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chr4:4416091-4416367 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 21

Conread position: 164-444
Cow position: chr4:18424516-18424232 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr4:3125804-3126093 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chr4:13548038-13548326 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 132

Conread position: 164-453
Cow position: chr4:5880174-5880467 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 234

Conread position: 168-450
Cow position: chr4:11111403-11111117 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 64

Conread position: 169-449
Cow position: chr4:9354761-9354479 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 268

Conread position: 170-299
Cow position: chr4:158531-158660 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 170-363
Cow position: chr4:65223518-65223323 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 187, 0

Conread position: 170-444
Cow position: chr4:1930608-1930332 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 102

Conread position: 170-444
Cow position: chr4:6268616-6268335 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 173-444
Cow position: chr4:41958148-41958421 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 34

Conread position: 174-444
Cow position: chr4:16056621-16056893 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 72

Conread position: 175-450
Cow position: chr4:9423415-9423146 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 181, 20

Conread position: 180-444
Cow position: chr4:54050268-54050533 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 174
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 24, 137

Conread position: 182-437
Cow position: chr4:21256382-21256641 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 184-449
Cow position: chr4:61694472-61694226 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 188
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 199-445
Cow position: chr4:33072776-33072527 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 199-446
Cow position: chr4:27295468-27295210 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 187
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 5, 0

Conread position: 208-443
Cow position: chr4:13493369-13493610 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 82

Conread position: 220-445
Cow position: chr4:57984053-57984281 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 275-428
Cow position: chr4:29531753-29531599 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 81, 113

Conread position: 289-449
Cow position: chr4:529533-529697 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 0

Conread position: 295-449
Cow position: chr4:159296-159451 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 142

Conread position: 349-449
Cow position: chr4:27333903-27334006 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 0

Show alignments to all cow chromosomes.