Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 11-310
Cow position:
Alignm length: 306
Alignm identity: 207
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 93, 163

Conread position: 11-436
Cow position:
Alignm length: 429
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 96

Conread position: 11-445
Cow position:
Alignm length: 462
Alignm identity: 316
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 155, 27

Conread position: 14-449
Cow position:
Alignm length: 440
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 52

Conread position: 15-244
Cow position:
Alignm length: 234
Alignm identity: 164
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 62, 210

Conread position: 16-299
Cow position:
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 108

Conread position: 16-309
Cow position:
Alignm length: 295
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 58

Conread position: 22-214
Cow position:
Alignm length: 196
Alignm identity: 142
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 130, 100

Conread position: 22-323
Cow position:
Alignm length: 302
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 22-336
Cow position:
Alignm length: 319
Alignm identity: 209
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 48

Conread position: 22-435
Cow position:
Alignm length: 425
Alignm identity: 274
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 60, 48

Conread position: 22-436
Cow position:
Alignm length: 440
Alignm identity: 303
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 88, 64

Conread position: 22-444
Cow position:
Alignm length: 431
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 22

Conread position: 23-308
Cow position:
Alignm length: 287
Alignm identity: 207
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 21, 44

Conread position: 23-436
Cow position:
Alignm length: 418
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 183

Conread position: 23-446
Cow position:
Alignm length: 427
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 32

Conread position: 24-442
Cow position:
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 79

Conread position: 25-443
Cow position:
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 30

Conread position: 33-443
Cow position:
Alignm length: 432
Alignm identity: 279
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 117, 102

Conread position: 34-256
Cow position:
Alignm length: 224
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 17

Conread position: 34-443
Cow position:
Alignm length: 422
Alignm identity: 286
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 17, 48

Conread position: 35-437
Cow position:
Alignm length: 411
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 97

Conread position: 41-275
Cow position:
Alignm length: 236
Alignm identity: 169
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 31, 12

Conread position: 41-450
Cow position:
Alignm length: 418
Alignm identity: 275
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 99, 11

Conread position: 45-442
Cow position:
Alignm length: 408
Alignm identity: 264
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 124, 38

Conread position: 47-450
Cow position:
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 6

Conread position: 56-409
Cow position:
Alignm length: 360
Alignm identity: 230
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 60, 25

Conread position: 68-436
Cow position:
Alignm length: 375
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 64

Conread position: 68-450
Cow position:
Alignm length: 389
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 64

Conread position: 88-421
Cow position:
Alignm length: 339
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 43

Conread position: 119-443
Cow position:
Alignm length: 328
Alignm identity: 210
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 239, 50

Conread position: 128-443
Cow position:
Alignm length: 320
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 52

Conread position: 131-443
Cow position:
Alignm length: 322
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 284

Conread position: 135-451
Cow position:
Alignm length: 325
Alignm identity: 210
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 24, 41

Conread position: 136-445
Cow position:
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 41

Conread position: 136-445
Cow position:
Alignm length: 315
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 43

Conread position: 139-283
Cow position:
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 78

Conread position: 139-411
Cow position:
Alignm length: 277
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 230

Conread position: 140-444
Cow position:
Alignm length: 310
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 146-283
Cow position:
Alignm length: 140
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 67

Conread position: 146-283
Cow position:
Alignm length: 140
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 146-283
Cow position:
Alignm length: 140
Alignm identity: 105
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 146-432
Cow position:
Alignm length: 291
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 39

Conread position: 146-445
Cow position:
Alignm length: 305
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 193

Conread position: 146-445
Cow position:
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 146-445
Cow position:
Alignm length: 302
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 146-445
Cow position:
Alignm length: 303
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 147-280
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 30

Conread position: 147-308
Cow position:
Alignm length: 177
Alignm identity: 135
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 13, 26

Conread position: 147-403
Cow position:
Alignm length: 259
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 32

Conread position: 147-444
Cow position:
Alignm length: 302
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 255

Conread position: 148-326
Cow position:
Alignm length: 179
Alignm identity: 144
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 148-450
Cow position:
Alignm length: 311
Alignm identity: 201
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 46

Conread position: 150-443
Cow position:
Alignm length: 297
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 297
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 280, 22

Conread position: 150-445
Cow position:
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 30

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 302
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 29

Conread position: 150-449
Cow position:
Alignm length: 303
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 151-445
Cow position:
Alignm length: 298
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 29

Conread position: 152-283
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 152-299
Cow position:
Alignm length: 149
Alignm identity: 120
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 28, 0

Conread position: 152-444
Cow position:
Alignm length: 296
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 152-444
Cow position:
Alignm length: 296
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 27

Conread position: 152-446
Cow position:
Alignm length: 298
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 107

Conread position: 163-449
Cow position:
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 164-282
Cow position:
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 164-297
Cow position:
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 164-301
Cow position:
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 164-396
Cow position:
Alignm length: 236
Alignm identity: 179
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 5, 71

Conread position: 164-410
Cow position:
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 118

Conread position: 164-449
Cow position:
Alignm length: 292
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 164

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 94

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 291
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 225

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 274

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 170-443
Cow position:
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 0

Conread position: 170-444
Cow position:
Alignm length: 278
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 64

Conread position: 170-449
Cow position:
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-449
Cow position:
Alignm length: 294
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 170-449
Cow position:
Alignm length: 283
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 161

Conread position: 175-445
Cow position:
Alignm length: 277
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 232

Conread position: 175-449
Cow position:
Alignm length: 282
Alignm identity: 187
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 20, 116

Conread position: 176-395
Cow position:
Alignm length: 225
Alignm identity: 159
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 118

Conread position: 184-446
Cow position:
Alignm length: 267
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 185-445
Cow position:
Alignm length: 267
Alignm identity: 184
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 66, 224

Conread position: 188-449
Cow position:
Alignm length: 267
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 193-445
Cow position:
Alignm length: 255
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 194-445
Cow position:
Alignm length: 255
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 195-299
Cow position:
Alignm length: 105
Alignm identity: 88
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 199-441
Cow position:
Alignm length: 246
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 194

Conread position: 203-449
Cow position:
Alignm length: 250
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 206-439
Cow position:
Alignm length: 241
Alignm identity: 173
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 90

Conread position: 211-446
Cow position:
Alignm length: 238
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 89

Conread position: 228-449
Cow position:
Alignm length: 225
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 229-404
Cow position:
Alignm length: 179
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 117, 0

Conread position: 230-450
Cow position:
Alignm length: 224
Alignm identity: 170
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 126, 29

Conread position: 249-449
Cow position:
Alignm length: 204
Alignm identity: 162
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 108, 0

Conread position: 252-443
Cow position:
Alignm length: 194
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 98, 85

Conread position: 258-449
Cow position:
Alignm length: 195
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 99, 0

Conread position: 260-410
Cow position:
Alignm length: 155
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 270-446
Cow position:
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 92, 37

Conread position: 272-444
Cow position:
Alignm length: 176
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 88, 30

Conread position: 279-453
Cow position:
Alignm length: 175
Alignm identity: 142
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 135, 0

Conread position: 294-436
Cow position:
Alignm length: 146
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 294-445
Cow position:
Alignm length: 155
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 0

Conread position: 294-446
Cow position:
Alignm length: 155
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 66, 0

Conread position: 297-449
Cow position:
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 60, 70

Conread position: 298-450
Cow position:
Alignm length: 163
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 312-450
Cow position:
Alignm length: 142
Alignm identity: 121
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 314-436
Cow position:
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 338-445
Cow position:
Alignm length: 111
Alignm identity: 95
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 340-449
Cow position:
Alignm length: 113
Alignm identity: 93
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.