Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 5-399
Cow position:
Alignm length: 400
Alignm identity: 218
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 172, 120

Conread position: 11-104
Cow position:
Alignm length: 96
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 14-249
Cow position:
Alignm length: 239
Alignm identity: 172
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 130, 211

Conread position: 14-320
Cow position:
Alignm length: 307
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 14-445
Cow position:
Alignm length: 442
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 50

Conread position: 14-453
Cow position:
Alignm length: 444
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 68

Conread position: 22-443
Cow position:
Alignm length: 436
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 23

Conread position: 22-449
Cow position:
Alignm length: 444
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 44

Conread position: 23-437
Cow position:
Alignm length: 421
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 48

Conread position: 23-444
Cow position:
Alignm length: 443
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 28

Conread position: 23-446
Cow position:
Alignm length: 431
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 111

Conread position: 26-384
Cow position:
Alignm length: 366
Alignm identity: 245
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 45

Conread position: 30-449
Cow position:
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 114

Conread position: 44-443
Cow position:
Alignm length: 407
Alignm identity: 257
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 22, 44

Conread position: 47-444
Cow position:
Alignm length: 413
Alignm identity: 278
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 224, 42

Conread position: 68-442
Cow position:
Alignm length: 383
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 64

Conread position: 74-436
Cow position:
Alignm length: 375
Alignm identity: 252
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 18, 37

Conread position: 87-441
Cow position:
Alignm length: 360
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 7

Conread position: 89-414
Cow position:
Alignm length: 331
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 30, 84

Conread position: 89-428
Cow position:
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 301

Conread position: 93-346
Cow position:
Alignm length: 257
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 9, 27

Conread position: 97-454
Cow position:
Alignm length: 374
Alignm identity: 255
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 152

Conread position: 101-449
Cow position:
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 154

Conread position: 124-446
Cow position:
Alignm length: 328
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 129-443
Cow position:
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 5

Conread position: 129-445
Cow position:
Alignm length: 321
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 117

Conread position: 129-445
Cow position:
Alignm length: 322
Alignm identity: 215
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 31, 51

Conread position: 135-271
Cow position:
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 135-436
Cow position:
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 135-443
Cow position:
Alignm length: 314
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 46

Conread position: 135-445
Cow position:
Alignm length: 315
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 47

Conread position: 135-445
Cow position:
Alignm length: 314
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 44

Conread position: 136-445
Cow position:
Alignm length: 313
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 37

Conread position: 137-299
Cow position:
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 139-290
Cow position:
Alignm length: 153
Alignm identity: 123
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 21, 0

Conread position: 139-353
Cow position:
Alignm length: 215
Alignm identity: 161
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 139-445
Cow position:
Alignm length: 312
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 146-283
Cow position:
Alignm length: 140
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 146-311
Cow position:
Alignm length: 173
Alignm identity: 136
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 17

Conread position: 146-426
Cow position:
Alignm length: 285
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 176

Conread position: 146-428
Cow position:
Alignm length: 287
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 146-436
Cow position:
Alignm length: 295
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-442
Cow position:
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 146-443
Cow position:
Alignm length: 302
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 146-445
Cow position:
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 33

Conread position: 146-446
Cow position:
Alignm length: 304
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 255

Conread position: 146-446
Cow position:
Alignm length: 305
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 27

Conread position: 146-446
Cow position:
Alignm length: 304
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 140

Conread position: 146-450
Cow position:
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 147-283
Cow position:
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 147-441
Cow position:
Alignm length: 302
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 23

Conread position: 147-444
Cow position:
Alignm length: 301
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 0

Conread position: 147-445
Cow position:
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 147-445
Cow position:
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 149-436
Cow position:
Alignm length: 292
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 152

Conread position: 149-445
Cow position:
Alignm length: 301
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 152

Conread position: 150-298
Cow position:
Alignm length: 149
Alignm identity: 120
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 150-436
Cow position:
Alignm length: 290
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 22

Conread position: 150-440
Cow position:
Alignm length: 294
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 298
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 32

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-448
Cow position:
Alignm length: 307
Alignm identity: 212
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 41, 257

Conread position: 150-449
Cow position:
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 152-270
Cow position:
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 152-444
Cow position:
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 245

Conread position: 154-430
Cow position:
Alignm length: 283
Alignm identity: 197
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 126, 214

Conread position: 154-444
Cow position:
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 69

Conread position: 155-444
Cow position:
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 32

Conread position: 161-444
Cow position:
Alignm length: 287
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 138

Conread position: 161-445
Cow position:
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 18

Conread position: 164-318
Cow position:
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 5, 0

Conread position: 164-321
Cow position:
Alignm length: 159
Alignm identity: 125
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 5, 0

Conread position: 164-442
Cow position:
Alignm length: 283
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 67

Conread position: 164-443
Cow position:
Alignm length: 284
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 56

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 49

Conread position: 164-449
Cow position:
Alignm length: 291
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 289
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 170-449
Cow position:
Alignm length: 286
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 270

Conread position: 170-449
Cow position:
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 175-445
Cow position:
Alignm length: 273
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 175-450
Cow position:
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 60

Conread position: 184-395
Cow position:
Alignm length: 214
Alignm identity: 147
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 172, 25

Conread position: 185-449
Cow position:
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 0

Conread position: 190-449
Cow position:
Alignm length: 263
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 92

Conread position: 194-443
Cow position:
Alignm length: 252
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 93

Conread position: 198-445
Cow position:
Alignm length: 250
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 98

Conread position: 198-445
Cow position:
Alignm length: 252
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 198-446
Cow position:
Alignm length: 263
Alignm identity: 181
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 155

Conread position: 202-445
Cow position:
Alignm length: 249
Alignm identity: 182
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 108, 119

Conread position: 203-449
Cow position:
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 205-426
Cow position:
Alignm length: 224
Alignm identity: 166
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 149, 82

Conread position: 208-427
Cow position:
Alignm length: 222
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 208-445
Cow position:
Alignm length: 241
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 64

Conread position: 209-436
Cow position:
Alignm length: 232
Alignm identity: 159
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 17

Conread position: 209-450
Cow position:
Alignm length: 251
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 19

Conread position: 210-450
Cow position:
Alignm length: 244
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 212

Conread position: 214-445
Cow position:
Alignm length: 238
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 6

Conread position: 216-445
Cow position:
Alignm length: 233
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 51

Conread position: 216-450
Cow position:
Alignm length: 238
Alignm identity: 181
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 143, 90

Conread position: 228-445
Cow position:
Alignm length: 221
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 59

Conread position: 259-449
Cow position:
Alignm length: 194
Alignm identity: 157
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 100, 55

Conread position: 262-450
Cow position:
Alignm length: 194
Alignm identity: 152
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 94, 71

Conread position: 270-443
Cow position:
Alignm length: 174
Alignm identity: 133
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 272-445
Cow position:
Alignm length: 177
Alignm identity: 147
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 86, 31

Conread position: 272-445
Cow position:
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 84, 116

Conread position: 278-446
Cow position:
Alignm length: 172
Alignm identity: 138
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 79, 0

Conread position: 282-444
Cow position:
Alignm length: 167
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 294-446
Cow position:
Alignm length: 157
Alignm identity: 127
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 148

Conread position: 298-450
Cow position:
Alignm length: 155
Alignm identity: 121
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 62, 31

Conread position: 305-441
Cow position:
Alignm length: 144
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 88

Conread position: 311-436
Cow position:
Alignm length: 129
Alignm identity: 102
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 312-449
Cow position:
Alignm length: 141
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 45, 9

Conread position: 320-445
Cow position:
Alignm length: 128
Alignm identity: 108
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 338-445
Cow position:
Alignm length: 112
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 354-450
Cow position:
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.