Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 8-443
Cow position:
Alignm length: 449
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 52

Conread position: 9-394
Cow position:
Alignm length: 388
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 45

Conread position: 11-204
Cow position:
Alignm length: 197
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 142

Conread position: 11-445
Cow position:
Alignm length: 440
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 113

Conread position: 11-446
Cow position:
Alignm length: 440
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 346, 48

Conread position: 11-446
Cow position:
Alignm length: 440
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 111

Conread position: 11-449
Cow position:
Alignm length: 443
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 102

Conread position: 11-450
Cow position:
Alignm length: 444
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 114

Conread position: 14-416
Cow position:
Alignm length: 405
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 39

Conread position: 15-204
Cow position:
Alignm length: 190
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 17-407
Cow position:
Alignm length: 410
Alignm identity: 268
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 49, 115

Conread position: 17-428
Cow position:
Alignm length: 419
Alignm identity: 275
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 47, 10

Conread position: 19-209
Cow position:
Alignm length: 193
Alignm identity: 134
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 130, 51

Conread position: 22-429
Cow position:
Alignm length: 419
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 33

Conread position: 22-446
Cow position:
Alignm length: 435
Alignm identity: 286
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 65

Conread position: 22-449
Cow position:
Alignm length: 431
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 28

Conread position: 22-452
Cow position:
Alignm length: 445
Alignm identity: 295
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 84

Conread position: 23-445
Cow position:
Alignm length: 428
Alignm identity: 294
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 31, 42

Conread position: 25-392
Cow position:
Alignm length: 374
Alignm identity: 243
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 182, 43

Conread position: 25-392
Cow position:
Alignm length: 373
Alignm identity: 238
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 49

Conread position: 26-346
Cow position:
Alignm length: 326
Alignm identity: 225
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 114, 29

Conread position: 26-428
Cow position:
Alignm length: 407
Alignm identity: 274
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 172, 102

Conread position: 33-444
Cow position:
Alignm length: 419
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 77

Conread position: 40-420
Cow position:
Alignm length: 400
Alignm identity: 258
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 63, 94

Conread position: 45-445
Cow position:
Alignm length: 404
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 84

Conread position: 45-447
Cow position:
Alignm length: 413
Alignm identity: 279
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 236, 82

Conread position: 62-445
Cow position:
Alignm length: 393
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 123

Conread position: 62-445
Cow position:
Alignm length: 392
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 87

Conread position: 68-443
Cow position:
Alignm length: 383
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 78

Conread position: 74-450
Cow position:
Alignm length: 385
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 24

Conread position: 93-429
Cow position:
Alignm length: 344
Alignm identity: 224
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 21, 53

Conread position: 98-356
Cow position:
Alignm length: 264
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 192

Conread position: 103-315
Cow position:
Alignm length: 216
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 104-443
Cow position:
Alignm length: 344
Alignm identity: 220
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 171, 22

Conread position: 122-446
Cow position:
Alignm length: 338
Alignm identity: 228
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 202

Conread position: 122-454
Cow position:
Alignm length: 340
Alignm identity: 226
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 79, 7

Conread position: 126-271
Cow position:
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 23

Conread position: 129-450
Cow position:
Alignm length: 326
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 51

Conread position: 132-445
Cow position:
Alignm length: 318
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 135-283
Cow position:
Alignm length: 151
Alignm identity: 109
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 135-445
Cow position:
Alignm length: 314
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 45

Conread position: 135-450
Cow position:
Alignm length: 323
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 46

Conread position: 135-451
Cow position:
Alignm length: 321
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 74

Conread position: 138-450
Cow position:
Alignm length: 319
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 108

Conread position: 139-271
Cow position:
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 139-445
Cow position:
Alignm length: 319
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 42

Conread position: 139-446
Cow position:
Alignm length: 310
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 210

Conread position: 140-445
Cow position:
Alignm length: 314
Alignm identity: 199
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 118

Conread position: 145-445
Cow position:
Alignm length: 306
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 146-282
Cow position:
Alignm length: 138
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 14, 35

Conread position: 146-402
Cow position:
Alignm length: 259
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 146-424
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 32, 114

Conread position: 146-443
Cow position:
Alignm length: 299
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-445
Cow position:
Alignm length: 306
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 146-445
Cow position:
Alignm length: 314
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 146-445
Cow position:
Alignm length: 307
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 146-445
Cow position:
Alignm length: 304
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-445
Cow position:
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 146-446
Cow position:
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 147-445
Cow position:
Alignm length: 303
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 147-445
Cow position:
Alignm length: 302
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 23

Conread position: 147-446
Cow position:
Alignm length: 310
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 25

Conread position: 147-446
Cow position:
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 147-450
Cow position:
Alignm length: 310
Alignm identity: 202
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 20, 38

Conread position: 149-444
Cow position:
Alignm length: 304
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 170

Conread position: 150-436
Cow position:
Alignm length: 290
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-443
Cow position:
Alignm length: 296
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 28

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-450
Cow position:
Alignm length: 303
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 151-272
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 151-450
Cow position:
Alignm length: 307
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 28

Conread position: 152-409
Cow position:
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 152-445
Cow position:
Alignm length: 297
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 21

Conread position: 153-438
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 145, 54

Conread position: 153-445
Cow position:
Alignm length: 298
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 133

Conread position: 155-450
Cow position:
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 17

Conread position: 163-446
Cow position:
Alignm length: 286
Alignm identity: 207
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 194, 63

Conread position: 163-449
Cow position:
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 163-450
Cow position:
Alignm length: 289
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 94

Conread position: 164-355
Cow position:
Alignm length: 196
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 5, 126

Conread position: 164-436
Cow position:
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 124

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position:
Alignm length: 285
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 21

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 74

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 30

Conread position: 169-445
Cow position:
Alignm length: 285
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 170-449
Cow position:
Alignm length: 284
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 170-449
Cow position:
Alignm length: 283
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 125

Conread position: 170-449
Cow position:
Alignm length: 283
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 99

Conread position: 170-449
Cow position:
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 173-446
Cow position:
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 85

Conread position: 188-449
Cow position:
Alignm length: 268
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 131

Conread position: 190-445
Cow position:
Alignm length: 258
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 194-428
Cow position:
Alignm length: 237
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 182

Conread position: 194-443
Cow position:
Alignm length: 254
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 202-418
Cow position:
Alignm length: 224
Alignm identity: 153
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 56

Conread position: 206-428
Cow position:
Alignm length: 226
Alignm identity: 169
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 160, 17

Conread position: 208-439
Cow position:
Alignm length: 235
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 208-443
Cow position:
Alignm length: 239
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 208-450
Cow position:
Alignm length: 246
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 78

Conread position: 216-427
Cow position:
Alignm length: 216
Alignm identity: 154
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 131, 81

Conread position: 219-445
Cow position:
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 134, 26

Conread position: 222-444
Cow position:
Alignm length: 230
Alignm identity: 162
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 137, 37

Conread position: 223-427
Cow position:
Alignm length: 206
Alignm identity: 141
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 115

Conread position: 223-443
Cow position:
Alignm length: 229
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 56, 156

Conread position: 223-447
Cow position:
Alignm length: 231
Alignm identity: 160
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 57, 141

Conread position: 226-438
Cow position:
Alignm length: 217
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 14, 9

Conread position: 228-436
Cow position:
Alignm length: 212
Alignm identity: 154
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 127, 20

Conread position: 228-446
Cow position:
Alignm length: 220
Alignm identity: 171
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 129, 67

Conread position: 228-450
Cow position:
Alignm length: 226
Alignm identity: 175
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 129, 40

Conread position: 230-399
Cow position:
Alignm length: 172
Alignm identity: 141
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 125, 0

Conread position: 271-428
Cow position:
Alignm length: 161
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 295-449
Cow position:
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 9

Conread position: 304-445
Cow position:
Alignm length: 146
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 328-451
Cow position:
Alignm length: 127
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 339-450
Cow position:
Alignm length: 116
Alignm identity: 96
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 351-429
Cow position:
Alignm length: 79
Alignm identity: 71
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.