Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 2-444
Cow position:
Alignm length: 448
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 64

Conread position: 8-446
Cow position:
Alignm length: 440
Alignm identity: 287
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 420, 106

Conread position: 11-204
Cow position:
Alignm length: 194
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-213
Cow position:
Alignm length: 203
Alignm identity: 161
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 84, 0

Conread position: 11-449
Cow position:
Alignm length: 455
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 418

Conread position: 11-450
Cow position:
Alignm length: 452
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 127

Conread position: 11-450
Cow position:
Alignm length: 445
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 51

Conread position: 15-446
Cow position:
Alignm length: 455
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 35

Conread position: 15-446
Cow position:
Alignm length: 435
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 51

Conread position: 16-280
Cow position:
Alignm length: 267
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 19-204
Cow position:
Alignm length: 186
Alignm identity: 144
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 103, 0

Conread position: 21-375
Cow position:
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 120

Conread position: 22-436
Cow position:
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 7

Conread position: 22-446
Cow position:
Alignm length: 439
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 123

Conread position: 23-419
Cow position:
Alignm length: 405
Alignm identity: 268
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 53, 45

Conread position: 23-449
Cow position:
Alignm length: 433
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 51

Conread position: 23-449
Cow position:
Alignm length: 436
Alignm identity: 299
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 22

Conread position: 23-449
Cow position:
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 34

Conread position: 26-224
Cow position:
Alignm length: 202
Alignm identity: 153
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 132, 42

Conread position: 26-446
Cow position:
Alignm length: 432
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 142

Conread position: 27-427
Cow position:
Alignm length: 406
Alignm identity: 269
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 53, 41

Conread position: 28-396
Cow position:
Alignm length: 373
Alignm identity: 261
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 38, 50

Conread position: 30-315
Cow position:
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 44

Conread position: 32-446
Cow position:
Alignm length: 423
Alignm identity: 279
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 248, 34

Conread position: 32-449
Cow position:
Alignm length: 423
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 100

Conread position: 48-449
Cow position:
Alignm length: 406
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 100

Conread position: 52-444
Cow position:
Alignm length: 400
Alignm identity: 267
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 129, 73

Conread position: 64-443
Cow position:
Alignm length: 388
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 64

Conread position: 64-446
Cow position:
Alignm length: 390
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 57

Conread position: 65-443
Cow position:
Alignm length: 384
Alignm identity: 266
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 42

Conread position: 74-396
Cow position:
Alignm length: 342
Alignm identity: 222
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 106

Conread position: 87-436
Cow position:
Alignm length: 352
Alignm identity: 235
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 269, 59

Conread position: 107-445
Cow position:
Alignm length: 349
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 12

Conread position: 118-436
Cow position:
Alignm length: 324
Alignm identity: 210
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 16

Conread position: 130-444
Cow position:
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 156

Conread position: 131-445
Cow position:
Alignm length: 329
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 132-445
Cow position:
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 50

Conread position: 134-445
Cow position:
Alignm length: 316
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 25

Conread position: 134-445
Cow position:
Alignm length: 317
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 135-445
Cow position:
Alignm length: 312
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 44

Conread position: 135-445
Cow position:
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 24

Conread position: 136-443
Cow position:
Alignm length: 312
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 176

Conread position: 136-450
Cow position:
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 6

Conread position: 140-383
Cow position:
Alignm length: 247
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 140-449
Cow position:
Alignm length: 314
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 131

Conread position: 140-449
Cow position:
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 145-443
Cow position:
Alignm length: 304
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 36

Conread position: 146-277
Cow position:
Alignm length: 134
Alignm identity: 106
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 40

Conread position: 146-283
Cow position:
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 146-445
Cow position:
Alignm length: 304
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 34

Conread position: 146-445
Cow position:
Alignm length: 307
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 24

Conread position: 146-445
Cow position:
Alignm length: 303
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 33

Conread position: 146-445
Cow position:
Alignm length: 305
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 35

Conread position: 146-446
Cow position:
Alignm length: 312
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 146-451
Cow position:
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 37

Conread position: 147-355
Cow position:
Alignm length: 210
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 53

Conread position: 147-436
Cow position:
Alignm length: 293
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 112

Conread position: 147-445
Cow position:
Alignm length: 302
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 32

Conread position: 148-395
Cow position:
Alignm length: 253
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 21

Conread position: 148-445
Cow position:
Alignm length: 301
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 135

Conread position: 150-443
Cow position:
Alignm length: 296
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 23

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 30

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-445
Cow position:
Alignm length: 299
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 29

Conread position: 150-449
Cow position:
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 150-450
Cow position:
Alignm length: 304
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 29

Conread position: 150-451
Cow position:
Alignm length: 306
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 151-426
Cow position:
Alignm length: 278
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 28

Conread position: 151-445
Cow position:
Alignm length: 298
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 18

Conread position: 152-347
Cow position:
Alignm length: 196
Alignm identity: 144
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 149, 0

Conread position: 161-385
Cow position:
Alignm length: 227
Alignm identity: 171
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 196, 0

Conread position: 163-446
Cow position:
Alignm length: 287
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 20

Conread position: 163-449
Cow position:
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 163-454
Cow position:
Alignm length: 296
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 223

Conread position: 164-419
Cow position:
Alignm length: 259
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 234

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 291
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 46

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position:
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 168-450
Cow position:
Alignm length: 290
Alignm identity: 212
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 168

Conread position: 170-284
Cow position:
Alignm length: 115
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 170-355
Cow position:
Alignm length: 186
Alignm identity: 143
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 170-410
Cow position:
Alignm length: 243
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 173-444
Cow position:
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 11

Conread position: 173-449
Cow position:
Alignm length: 280
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 173-449
Cow position:
Alignm length: 280
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 78

Conread position: 173-450
Cow position:
Alignm length: 281
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 47

Conread position: 176-449
Cow position:
Alignm length: 276
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 0

Conread position: 177-450
Cow position:
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 26

Conread position: 187-414
Cow position:
Alignm length: 232
Alignm identity: 163
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 43, 36

Conread position: 203-444
Cow position:
Alignm length: 245
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 234

Conread position: 203-445
Cow position:
Alignm length: 246
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 185

Conread position: 203-450
Cow position:
Alignm length: 251
Alignm identity: 172
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 152, 20

Conread position: 204-445
Cow position:
Alignm length: 245
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 17

Conread position: 208-445
Cow position:
Alignm length: 241
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 209-434
Cow position:
Alignm length: 229
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 148, 25

Conread position: 219-438
Cow position:
Alignm length: 224
Alignm identity: 176
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 140, 40

Conread position: 230-442
Cow position:
Alignm length: 215
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 129, 168

Conread position: 238-436
Cow position:
Alignm length: 201
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 190

Conread position: 270-450
Cow position:
Alignm length: 186
Alignm identity: 137
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 87, 11

Conread position: 272-445
Cow position:
Alignm length: 177
Alignm identity: 150
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 274-446
Cow position:
Alignm length: 175
Alignm identity: 142
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 83, 16

Conread position: 287-445
Cow position:
Alignm length: 161
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 122

Conread position: 298-446
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 300-444
Cow position:
Alignm length: 148
Alignm identity: 118
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 57, 0

Show alignments to all cow chromosomes.