Cow genome map

Conread name: Ss1.1-rcbl0_011794.5

Conread position: 1-285
Cow position: chrX:16016749-16016465 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 199
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 15, 93

Conread position: 9-436
Cow position: chrX:13084802-13084356 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 286
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 129, 162

Conread position: 9-450
Cow position: chrX:1689855-1689422 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 281
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 138, 35

Conread position: 11-194
Cow position: chrX:21587468-21587647 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 132, 0

Conread position: 14-443
Cow position: chrX:20697142-20696736 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 48

Conread position: 14-444
Cow position: chrX:30367214-30366806 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 30

Conread position: 15-220
Cow position: chrX:30004108-30004307 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 15-443
Cow position: chrX:13417473-13417061 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 15-445
Cow position: chrX:2536515-2536081 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 0

Conread position: 15-446
Cow position: chrX:40246935-40246508 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 47

Conread position: 15-448
Cow position: chrX:6426347-6426769 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 263
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 276, 55

Conread position: 15-449
Cow position: chrX:4410623-4411042 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 280
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 275, 6

Conread position: 15-454
Cow position: chrX:13052976-13053397 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 52

Conread position: 19-206
Cow position: chrX:31726057-31726243 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 105, 110

Conread position: 19-428
Cow position: chrX:6282801-6282402 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 171

Conread position: 20-444
Cow position: chrX:24112876-24112463 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 108

Conread position: 22-243
Cow position: chrX:2143686-2143898 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 22-288
Cow position: chrX:29928381-29928129 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 22-312
Cow position: chrX:6885339-6885058 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 257, 42

Conread position: 22-419
Cow position: chrX:33214213-33214621 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 151

Conread position: 22-425
Cow position: chrX:34838343-34837956 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 259
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 314, 44

Conread position: 22-443
Cow position: chrX:10383686-10384112 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 279
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 58, 46

Conread position: 23-407
Cow position: chrX:16988254-16988629 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 250
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 58

Conread position: 23-420
Cow position: chrX:6015125-6014718 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 272
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 35, 60

Conread position: 23-421
Cow position: chrX:19873751-19874169 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 295
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 58, 47

Conread position: 23-443
Cow position: chrX:26427698-26427282 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 103

Conread position: 23-451
Cow position: chrX:18534441-18534841 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 101

Conread position: 24-436
Cow position: chrX:22130301-22129882 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 53

Conread position: 25-214
Cow position: chrX:29758544-29758733 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 138
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 39

Conread position: 26-436
Cow position: chrX:31081924-31082331 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 48

Conread position: 28-268
Cow position: chrX:29814809-29815045 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 57

Conread position: 28-436
Cow position: chrX:17614034-17613641 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 180, 61

Conread position: 28-444
Cow position: chrX:10417352-10416928 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 56

Conread position: 28-447
Cow position: chrX:6250478-6250064 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 56

Conread position: 28-449
Cow position: chrX:15874649-15874227 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 284
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 186, 96

Conread position: 29-444
Cow position: chrX:20796934-20797341 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 81

Conread position: 29-451
Cow position: chrX:27960511-27960926 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 227

Conread position: 30-444
Cow position: chrX:29779534-29779129 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 274
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 36, 50

Conread position: 31-381
Cow position: chrX:23070661-23071017 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 23, 52

Conread position: 34-449
Cow position: chrX:17667933-17667525 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 40

Conread position: 40-314
Cow position: chrX:30140855-30140577 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 55

Conread position: 41-449
Cow position: chrX:22513759-22513346 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 119, 41

Conread position: 45-435
Cow position: chrX:2012675-2012311 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 256
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 313, 36

Conread position: 49-450
Cow position: chrX:44387099-44387498 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 25

Conread position: 63-416
Cow position: chrX:27350977-27350625 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 222
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 144, 13

Conread position: 68-444
Cow position: chrX:5863379-5863761 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 70

Conread position: 99-450
Cow position: chrX:3625311-3625663 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 226
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 33

Conread position: 109-450
Cow position: chrX:37332224-37332579 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 224
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 114-403
Cow position: chrX:22814445-22814718 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 245, 73

Conread position: 115-436
Cow position: chrX:29285477-29285802 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 222

Conread position: 115-449
Cow position: chrX:7481664-7482001 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 19

Conread position: 129-271
Cow position: chrX:24275724-24275866 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 20

Conread position: 131-445
Cow position: chrX:29853515-29853197 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 44

Conread position: 135-266
Cow position: chrX:32467310-32467441 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 45

Conread position: 135-283
Cow position: chrX:21632526-21632377 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 135-435
Cow position: chrX:29794058-29793763 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 28

Conread position: 135-436
Cow position: chrX:23391538-23391236 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 24

Conread position: 136-445
Cow position: chrX:23041065-23040757 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 6

Conread position: 139-439
Cow position: chrX:23319507-23319206 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 202
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 49, 154

Conread position: 140-272
Cow position: chrX:5283681-5283546 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 140-443
Cow position: chrX:21340458-21340766 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 291

Conread position: 140-444
Cow position: chrX:5323669-5323359 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 140-445
Cow position: chrX:16699365-16699672 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 39

Conread position: 140-449
Cow position: chrX:5336434-5336117 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 145-281
Cow position: chrX:40057006-40056870 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 145-445
Cow position: chrX:29096269-29096573 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 28

Conread position: 146-277
Cow position: chrX:20804196-20804330 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 146-283
Cow position: chrX:21289422-21289283 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 146-347
Cow position: chrX:28603390-28603191 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 14, 126

Conread position: 146-443
Cow position: chrX:26767129-26766829 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 117

Conread position: 146-445
Cow position: chrX:320536-320835 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 61

Conread position: 146-445
Cow position: chrX:970836-971140 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 146-445
Cow position: chrX:12478791-12479093 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 146-445
Cow position: chrX:23277089-23277388 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 34

Conread position: 146-445
Cow position: chrX:30183825-30183522 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 35

Conread position: 146-446
Cow position: chrX:21058862-21059154 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 41

Conread position: 146-446
Cow position: chrX:30178926-30178621 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 153

Conread position: 147-283
Cow position: chrX:37142516-37142380 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 11, 114

Conread position: 147-294
Cow position: chrX:15599000-15599147 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 33

Conread position: 147-450
Cow position: chrX:29885053-29885363 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 28

Conread position: 148-298
Cow position: chrX:24136330-24136183 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 148-443
Cow position: chrX:29950520-29950219 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 149-444
Cow position: chrX:18659716-18659418 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 149-449
Cow position: chrX:30055669-30055366 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 149-450
Cow position: chrX:24196320-24196012 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 61

Conread position: 150-333
Cow position: chrX:18954450-18954268 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 154
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 150-366
Cow position: chrX:22488256-22488473 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-423
Cow position: chrX:24479001-24478734 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 191
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 38, 63

Conread position: 150-444
Cow position: chrX:16363057-16362760 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 150-445
Cow position: chrX:2482562-2482264 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 29

Conread position: 150-445
Cow position: chrX:15127170-15126871 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 118

Conread position: 150-445
Cow position: chrX:26528051-26528346 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 29

Conread position: 150-446
Cow position: chrX:21829599-21829897 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 29

Conread position: 150-450
Cow position: chrX:24484340-24484040 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 123

Conread position: 151-444
Cow position: chrX:30232032-30231731 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 28

Conread position: 151-445
Cow position: chrX:13413064-13412767 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 28

Conread position: 151-445
Cow position: chrX:21223004-21223293 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 28

Conread position: 152-445
Cow position: chrX:26758529-26758235 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 27

Conread position: 153-405
Cow position: chrX:5299146-5298893 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 20

Conread position: 153-445
Cow position: chrX:23019401-23019694 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 98

Conread position: 155-450
Cow position: chrX:23418929-23418628 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 194
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 255

Conread position: 161-414
Cow position: chrX:12669779-12669522 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 251

Conread position: 161-436
Cow position: chrX:30056730-30057015 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 161-446
Cow position: chrX:24089480-24089768 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 18

Conread position: 163-272
Cow position: chrX:26627942-26627835 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 163-374
Cow position: chrX:11433781-11433994 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 163
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 194, 0

Conread position: 163-446
Cow position: chrX:28634336-28634052 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 123

Conread position: 163-449
Cow position: chrX:1833907-1834187 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 60

Conread position: 163-449
Cow position: chrX:22619228-22618939 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 30

Conread position: 163-449
Cow position: chrX:39563851-39563564 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 264

Conread position: 164-294
Cow position: chrX:16275757-16275887 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 125

Conread position: 164-296
Cow position: chrX:41410941-41410808 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 164-298
Cow position: chrX:982718-982853 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 164-307
Cow position: chrX:507327-507471 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 5, 0

Conread position: 164-413
Cow position: chrX:8454832-8455086 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-442
Cow position: chrX:31493500-31493782 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-443
Cow position: chrX:2604128-2604411 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-443
Cow position: chrX:12343036-12343317 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 153

Conread position: 164-443
Cow position: chrX:21490278-21490559 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 277

Conread position: 164-444
Cow position: chrX:2101939-2102222 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 153

Conread position: 164-444
Cow position: chrX:6872993-6872709 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chrX:8479729-8480014 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chrX:15179351-15179061 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 36

Conread position: 164-444
Cow position: chrX:21304446-21304161 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-444
Cow position: chrX:37812242-37812525 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 21

Conread position: 164-444
Cow position: chrX:37849095-37849377 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 101

Conread position: 164-447
Cow position: chrX:12803784-12803498 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 240

Conread position: 164-449
Cow position: chrX:2562777-2562488 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:3376028-3375743 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 21

Conread position: 164-449
Cow position: chrX:9008418-9008707 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:9125435-9125732 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 237

Conread position: 164-449
Cow position: chrX:12280190-12279901 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:12353320-12353609 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:12654680-12654393 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 197

Conread position: 164-449
Cow position: chrX:13076617-13076328 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 99

Conread position: 164-449
Cow position: chrX:13097191-13096902 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 99

Conread position: 164-449
Cow position: chrX:13398040-13397751 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:17478442-17478155 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 163

Conread position: 164-449
Cow position: chrX:18219477-18219766 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:20359971-20359682 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:27426240-27425951 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:28562134-28561846 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 160

Conread position: 164-449
Cow position: chrX:28585060-28585349 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:28758561-28758264 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:30011119-30011408 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:30173591-30173302 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 164-449
Cow position: chrX:35529942-35530231 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 168-443
Cow position: chrX:10531473-10531195 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 168-445
Cow position: chrX:12458910-12459199 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 205
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 16, 93

Conread position: 168-449
Cow position: chrX:22611032-22611315 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 208

Conread position: 169-271
Cow position: chrX:6909111-6909009 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 170-314
Cow position: chrX:31187159-31187015 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 170-336
Cow position: chrX:8670678-8670844 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 170-363
Cow position: chrX:29947794-29947989 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 157
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 187, 0

Conread position: 170-443
Cow position: chrX:3421098-3420827 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 125

Conread position: 170-444
Cow position: chrX:26400090-26399817 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 249

Conread position: 170-447
Cow position: chrX:11464915-11464635 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-449
Cow position: chrX:5394914-5394632 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 228

Conread position: 170-449
Cow position: chrX:7030273-7030551 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 116

Conread position: 170-449
Cow position: chrX:7093685-7093967 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-449
Cow position: chrX:7751987-7752268 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 116

Conread position: 170-449
Cow position: chrX:14594858-14595140 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-449
Cow position: chrX:14786785-14786517 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 187, 52

Conread position: 170-449
Cow position: chrX:16812508-16812226 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 216

Conread position: 170-449
Cow position: chrX:20315968-20315693 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 87

Conread position: 170-449
Cow position: chrX:22525517-22525235 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 170-449
Cow position: chrX:32067069-32066793 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 111

Conread position: 170-450
Cow position: chrX:31198534-31198817 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 173-296
Cow position: chrX:41404383-41404260 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 174-449
Cow position: chrX:8588269-8588547 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 175-436
Cow position: chrX:15980858-15980594 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 0

Conread position: 187-439
Cow position: chrX:3407707-3407454 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 95, 6

Conread position: 193-444
Cow position: chrX:11149207-11148969 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 160

Conread position: 198-436
Cow position: chrX:21589089-21589330 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 0

Conread position: 201-417
Cow position: chrX:5833313-5833095 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 202-436
Cow position: chrX:21579595-21579829 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 112

Conread position: 203-449
Cow position: chrX:12288274-12288034 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 200

Conread position: 203-450
Cow position: chrX:16237903-16238153 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 208-442
Cow position: chrX:1547106-1547343 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 208-445
Cow position: chrX:20720115-20720355 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 0

Conread position: 209-396
Cow position: chrX:22582600-22582408 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 86, 50

Conread position: 209-444
Cow position: chrX:29911299-29911061 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 210-450
Cow position: chrX:28553776-28554010 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 143, 56

Conread position: 221-445
Cow position: chrX:41851055-41850829 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 223-445
Cow position: chrX:27495064-27495289 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 228-445
Cow position: chrX:30711735-30711955 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 228-449
Cow position: chrX:507186-506962 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 228-449
Cow position: chrX:1942597-1942376 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 25

Conread position: 229-436
Cow position: chrX:23214207-23213997 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 154
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 74, 24

Conread position: 231-389
Cow position: chrX:4796458-4796614 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 0

Conread position: 239-437
Cow position: chrX:7407324-7407125 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 20

Conread position: 240-447
Cow position: chrX:28871019-28870810 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 118, 13

Conread position: 249-447
Cow position: chrX:34553296-34553493 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 162
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 106, 71

Conread position: 256-368
Cow position: chrX:42450446-42450339 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 266-442
Cow position: chrX:21269852-21269674 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 92, 21

Conread position: 270-440
Cow position: chrX:2143902-2144074 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 85, 33

Conread position: 274-444
Cow position: chrX:28651352-28651180 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 144
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 83, 123

Conread position: 276-446
Cow position: chrX:27987631-27987456 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 281-449
Cow position: chrX:982860-983031 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 285-444
Cow position: chrX:31187020-31186860 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 33

Conread position: 286-450
Cow position: chrX:6242449-6242277 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 73, 0

Conread position: 290-449
Cow position: chrX:5652128-5651970 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 22

Conread position: 295-449
Cow position: chrX:41411396-41411553 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 62, 0

Conread position: 296-451
Cow position: chrX:16016210-16016053 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 63, 0

Conread position: 301-436
Cow position: chrX:34345456-34345594 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 301-449
Cow position: chrX:27624214-27624365 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 311-442
Cow position: chrX:15599199-15599333 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 311-444
Cow position: chrX:16275878-16276013 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 311-449
Cow position: chrX:6884833-6884693 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 313-449
Cow position: chrX:5283547-5283408 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 329-445
Cow position: chrX:18953522-18953403 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 333-444
Cow position: chrX:24325325-24325211 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.