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Cow genome map

           
Conread name:
           
Ss1.1-rcbl0_016468.5.5
        

               
Conread position:
               
370-602
               

               
Cow position:
               
chr13:5261885-5262115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
205, 26
               

               
Conread position:
               
378-736
               

               
Cow position:
               
chr13:1368474-1368113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
92, 16
               

               
Conread position:
               
378-736
               

               
Cow position:
               
chr13:18197434-18197070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
386-579
               

               
Cow position:
               
chr13:16344153-16343963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
22, 42
               

               
Conread position:
               
389-804
               

               
Cow position:
               
chr13:47007290-47007699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 81
               

               
Conread position:
               
389-825
               

               
Cow position:
               
chr13:20879389-20879818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 7
               

               
Conread position:
               
389-826
               

               
Cow position:
               
chr13:60429632-60430069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 117
               

               
Conread position:
               
391-763
               

               
Cow position:
               
chr13:34670291-34669918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 84
               

               
Conread position:
               
393-832
               

               
Cow position:
               
chr13:23682303-23682746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 217
               

               
Conread position:
               
396-732
               

               
Cow position:
               
chr13:36352548-36352863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
74, 96
               

               
Conread position:
               
396-742
               

               
Cow position:
               
chr13:36701396-36701749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 76
               

               
Conread position:
               
396-850
               

               
Cow position:
               
chr13:36770981-36771437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 287
               

               
Conread position:
               
397-527
               

               
Cow position:
               
chr13:34112758-34112630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
397-548
               

               
Cow position:
               
chr13:20805327-20805176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-552
               

               
Cow position:
               
chr13:53537152-53536997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-554
               

               
Cow position:
               
chr13:5229006-5228849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-561
               

               
Cow position:
               
chr13:33816308-33816145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
397-564
               

               
Cow position:
               
chr13:20930874-20930707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-564
               

               
Cow position:
               
chr13:45072981-45073148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-568
               

               
Cow position:
               
chr13:42294819-42294648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-569
               

               
Cow position:
               
chr13:11202662-11202490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-571
               

               
Cow position:
               
chr13:24099547-24099721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
397-571
               

               
Cow position:
               
chr13:58211095-58210922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-572
               

               
Cow position:
               
chr13:53052387-53052562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-575
               

               
Cow position:
               
chr13:8195547-8195368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
397-575
               

               
Cow position:
               
chr13:9734389-9734207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
397-575
               

               
Cow position:
               
chr13:37520910-37521088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
67, 77
               

               
Conread position:
               
397-575
               

               
Cow position:
               
chr13:44323418-44323241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
397-575
               

               
Cow position:
               
chr13:50681322-50681499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
397-588
               

               
Cow position:
               
chr13:40722244-40722442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
397-590
               

               
Cow position:
               
chr13:58742689-58742885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
397-592
               

               
Cow position:
               
chr13:26261312-26261509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
176, 76
               

               
Conread position:
               
397-599
               

               
Cow position:
               
chr13:22906730-22906523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 54
               

               
Conread position:
               
397-599
               

               
Cow position:
               
chr13:31580375-31580575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
397-602
               

               
Cow position:
               
chr13:2558070-2558278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
397-602
               

               
Cow position:
               
chr13:2800435-2800643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
397-602
               

               
Cow position:
               
chr13:54094435-54094219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
397-606
               

               
Cow position:
               
chr13:4262353-4262135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
397-606
               

               
Cow position:
               
chr13:4264443-4264225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
397-615
               

               
Cow position:
               
chr13:32980690-32980469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
397-617
               

               
Cow position:
               
chr13:3822539-3822315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
397-621
               

               
Cow position:
               
chr13:5621844-5621617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
397-621
               

               
Cow position:
               
chr13:8010139-8010366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-621
               

               
Cow position:
               
chr13:9002188-9001965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
182, 210
               

               
Conread position:
               
397-621
               

               
Cow position:
               
chr13:38612761-38612980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
397-622
               

               
Cow position:
               
chr13:14589962-14589734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-622
               

               
Cow position:
               
chr13:45455643-45455871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
397-627
               

               
Cow position:
               
chr13:11254105-11253873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
397-641
               

               
Cow position:
               
chr13:52859455-52859226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
397-689
               

               
Cow position:
               
chr13:42085253-42084956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 288
               

               
Conread position:
               
397-693
               

               
Cow position:
               
chr13:24729388-24729090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 237
               

               
Conread position:
               
397-693
               

               
Cow position:
               
chr13:40989517-40989216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
179, 54
               

               
Conread position:
               
397-699
               

               
Cow position:
               
chr13:33976108-33975814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
397-700
               

               
Cow position:
               
chr13:47509692-47509998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-708
               

               
Cow position:
               
chr13:6343433-6343744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
182, 35
               

               
Conread position:
               
397-711
               

               
Cow position:
               
chr13:5910276-5910592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
26, 153
               

               
Conread position:
               
397-712
               

               
Cow position:
               
chr13:19565157-19564841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-712
               

               
Cow position:
               
chr13:25413118-25412801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 303
               

               
Conread position:
               
397-719
               

               
Cow position:
               
chr13:31607888-31607565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 257
               

               
Conread position:
               
397-719
               

               
Cow position:
               
chr13:48628086-48628403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
180, 229
               

               
Conread position:
               
397-727
               

               
Cow position:
               
chr13:32733640-32733303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
180, 229
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:2955401-2955742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:3165923-3166264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:3353550-3353893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 76
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:8301106-8301447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:27241364-27241027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
85, 222
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:55338286-55338632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
75, 23
               

               
Conread position:
               
397-731
               

               
Cow position:
               
chr13:59169996-59169663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
85, 79
               

               
Conread position:
               
397-732
               

               
Cow position:
               
chr13:26098582-26098247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 224
               

               
Conread position:
               
397-737
               

               
Cow position:
               
chr13:18054807-18055150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
175, 257
               

               
Conread position:
               
397-737
               

               
Cow position:
               
chr13:20538020-20537684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 34
               

               
Conread position:
               
397-737
               

               
Cow position:
               
chr13:25453610-25453263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
397-740
               

               
Cow position:
               
chr13:12244576-12244923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
397-741
               

               
Cow position:
               
chr13:6317205-6316858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:4615557-4615909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:6716484-6716132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:6869854-6870201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 23
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:7402956-7403307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:11266912-11267264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:13776512-13776864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:14034026-14033674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:14551580-14551228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:16092244-16091894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
175, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:19102126-19101774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:25848941-25849275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:26161040-26161392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:26203908-26203556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:27417075-27416723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:28130475-28130123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:38574592-38574240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:43892372-43892720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:45934175-45934527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:47023148-47022796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:49446307-49446659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:49612539-49612187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:50440277-50439925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:51297937-51297585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-742
               

               
Cow position:
               
chr13:52275974-52276326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-746
               

               
Cow position:
               
chr13:21729554-21729197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-747
               

               
Cow position:
               
chr13:51483762-51484120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
397-748
               

               
Cow position:
               
chr13:19229641-19229282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-751
               

               
Cow position:
               
chr13:50618714-50618353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-753
               

               
Cow position:
               
chr13:1636963-1637325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
176, 251
               

               
Conread position:
               
397-754
               

               
Cow position:
               
chr13:6361199-6361564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-754
               

               
Cow position:
               
chr13:16808133-16808498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 257
               

               
Conread position:
               
397-755
               

               
Cow position:
               
chr13:33500123-33499761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 61
               

               
Conread position:
               
397-756
               

               
Cow position:
               
chr13:7366005-7366371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
179, 303
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr13:560837-560469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr13:670793-671160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
177, 58
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr13:32081426-32081795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
11, 76
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr13:42086582-42086218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
169, 75
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr13:49977221-49977590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-757
               

               
Cow position:
               
chr13:54975365-54975733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-758
               

               
Cow position:
               
chr13:7870014-7869636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
397-758
               

               
Cow position:
               
chr13:42215568-42215198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-758
               

               
Cow position:
               
chr13:46055607-46055238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-758
               

               
Cow position:
               
chr13:50284643-50284275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-759
               

               
Cow position:
               
chr13:6552918-6552544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
397-759
               

               
Cow position:
               
chr13:15920910-15920544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 95
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:9537786-9538148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 118
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:21231063-21231432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:22790355-22789989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
179, 85
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:33332789-33332424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 295
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:34038006-34037636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 237
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:42277146-42277513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 144
               

               
Conread position:
               
397-760
               

               
Cow position:
               
chr13:43151547-43151177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 257
               

               
Conread position:
               
397-765
               

               
Cow position:
               
chr13:11795151-11794772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 254
               

               
Conread position:
               
397-768
               

               
Cow position:
               
chr13:645475-645854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
85, 70
               

               
Conread position:
               
397-768
               

               
Cow position:
               
chr13:1346614-1346234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 0
               

               
Conread position:
               
397-768
               

               
Cow position:
               
chr13:4963777-4964155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-768
               

               
Cow position:
               
chr13:24931270-24930890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-768
               

               
Cow position:
               
chr13:35540952-35541331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-768
               

               
Cow position:
               
chr13:36673219-36673599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 340
               

               
Conread position:
               
397-773
               

               
Cow position:
               
chr13:36937270-36937635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
175, 75
               

               
Conread position:
               
397-778
               

               
Cow position:
               
chr13:13330097-13330480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
85, 75
               

               
Conread position:
               
397-781
               

               
Cow position:
               
chr13:34871739-34872122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
180, 42
               

               
Conread position:
               
397-786
               

               
Cow position:
               
chr13:34345853-34346247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
397-788
               

               
Cow position:
               
chr13:42214584-42214188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
175, 45
               

               
Conread position:
               
397-789
               

               
Cow position:
               
chr13:3970190-3970590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
182, 257
               

               
Conread position:
               
397-789
               

               
Cow position:
               
chr13:9301935-9302334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
397-789
               

               
Cow position:
               
chr13:9350461-9350060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 61
               

               
Conread position:
               
397-789
               

               
Cow position:
               
chr13:11390809-11391204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
100, 75
               

               
Conread position:
               
397-789
               

               
Cow position:
               
chr13:30651616-30651222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 275
               

               
Conread position:
               
397-789
               

               
Cow position:
               
chr13:32550292-32550693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 0
               

               
Conread position:
               
397-790
               

               
Cow position:
               
chr13:30504896-30504499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 212
               

               
Conread position:
               
397-791
               

               
Cow position:
               
chr13:20571166-20570770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 245
               

               
Conread position:
               
397-791
               

               
Cow position:
               
chr13:60447654-60448055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 24
               

               
Conread position:
               
397-795
               

               
Cow position:
               
chr13:13126179-13125774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
175, 394
               

               
Conread position:
               
397-795
               

               
Cow position:
               
chr13:27027338-27027734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
281, 96
               

               
Conread position:
               
397-804
               

               
Cow position:
               
chr13:7662993-7663395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 58
               

               
Conread position:
               
397-806
               

               
Cow position:
               
chr13:24754330-24753907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 129
               

               
Conread position:
               
397-806
               

               
Cow position:
               
chr13:47313337-47312946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
397-810
               

               
Cow position:
               
chr13:49805407-49804992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 90
               

               
Conread position:
               
397-814
               

               
Cow position:
               
chr13:16015255-16014830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 293
               

               
Conread position:
               
397-814
               

               
Cow position:
               
chr13:41254066-41253639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
397-817
               

               
Cow position:
               
chr13:60508683-60509104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
260, 164
               

               
Conread position:
               
397-821
               

               
Cow position:
               
chr13:60690277-60690718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 214
               

               
Conread position:
               
397-822
               

               
Cow position:
               
chr13:34941217-34941641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 225
               

               
Conread position:
               
397-822
               

               
Cow position:
               
chr13:51941174-51940745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
397-823
               

               
Cow position:
               
chr13:5751981-5752419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
397-825
               

               
Cow position:
               
chr13:6974610-6974168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 18
               

               
Conread position:
               
397-825
               

               
Cow position:
               
chr13:15446482-15446049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 135
               

               
Conread position:
               
397-825
               

               
Cow position:
               
chr13:25695331-25695761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 71
               

               
Conread position:
               
397-825
               

               
Cow position:
               
chr13:34052156-34052582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
397-825
               

               
Cow position:
               
chr13:37945780-37946201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 210
               

               
Conread position:
               
397-828
               

               
Cow position:
               
chr13:60879464-60879894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 26
               

               
Conread position:
               
397-831
               

               
Cow position:
               
chr13:6664577-6664143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 94
               

               
Conread position:
               
397-831
               

               
Cow position:
               
chr13:12616194-12615765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
87, 25
               

               
Conread position:
               
397-832
               

               
Cow position:
               
chr13:311872-311432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 342
               

               
Conread position:
               
397-832
               

               
Cow position:
               
chr13:18533994-18534434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 289
               

               
Conread position:
               
397-833
               

               
Cow position:
               
chr13:4944950-4945392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 257
               

               
Conread position:
               
397-834
               

               
Cow position:
               
chr13:18329574-18329123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 260
               

               
Conread position:
               
397-834
               

               
Cow position:
               
chr13:33466971-33467416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 258
               

               
Conread position:
               
397-835
               

               
Cow position:
               
chr13:46324351-46324791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 89
               

               
Conread position:
               
397-846
               

               
Cow position:
               
chr13:25248698-25249167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 241
               

               
Conread position:
               
397-846
               

               
Cow position:
               
chr13:37483824-37484288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 350
               

               
Conread position:
               
397-847
               

               
Cow position:
               
chr13:15167257-15166803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 236
               

               
Conread position:
               
397-853
               

               
Cow position:
               
chr13:6616308-6616770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
397-853
               

               
Cow position:
               
chr13:12407844-12408304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 220
               

               
Conread position:
               
397-855
               

               
Cow position:
               
chr13:19638989-19639451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 20
               

               
Conread position:
               
397-855
               

               
Cow position:
               
chr13:55371721-55372185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 413
               

               
Conread position:
               
397-856
               

               
Cow position:
               
chr13:20563431-20562974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 96
               

               
Conread position:
               
397-856
               

               
Cow position:
               
chr13:61954790-61955256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 330
               

               
Conread position:
               
397-857
               

               
Cow position:
               
chr13:1011772-1011311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 395
               

               
Conread position:
               
397-857
               

               
Cow position:
               
chr13:58044068-58043608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 225
               

               
Conread position:
               
397-858
               

               
Cow position:
               
chr13:971456-971921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 305
               

               
Conread position:
               
397-866
               

               
Cow position:
               
chr13:4735993-4736463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
69, 61
               

               
Conread position:
               
397-866
               

               
Cow position:
               
chr13:13220511-13220982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
397-866
               

               
Cow position:
               
chr13:15536932-15536463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 35
               

               
Conread position:
               
397-866
               

               
Cow position:
               
chr13:15538435-15537966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 35
               

               
Conread position:
               
398-550
               

               
Cow position:
               
chr13:19393693-19393541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
398-592
               

               
Cow position:
               
chr13:9570456-9570263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
187, 179
               

               
Conread position:
               
398-620
               

               
Cow position:
               
chr13:13222761-13222536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 19
               

               
Conread position:
               
398-825
               

               
Cow position:
               
chr13:22774861-22775291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 236
               

               
Conread position:
               
398-835
               

               
Cow position:
               
chr13:57493744-57494192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 225
               

               
Conread position:
               
398-850
               

               
Cow position:
               
chr13:28683791-28683349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
346, 74
               

               
Conread position:
               
399-586
               

               
Cow position:
               
chr13:60967235-60967038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
399-602
               

               
Cow position:
               
chr13:14302434-14302228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
83, 76
               

               
Conread position:
               
399-742
               

               
Cow position:
               
chr13:13762244-13762594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
399-833
               

               
Cow position:
               
chr13:30306967-30307403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 255
               

               
Conread position:
               
400-768
               

               
Cow position:
               
chr13:43106962-43106586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 72
               

               
Conread position:
               
401-806
               

               
Cow position:
               
chr13:25927249-25926818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
403-590
               

               
Cow position:
               
chr13:23166436-23166622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 175
               

               
Conread position:
               
403-592
               

               
Cow position:
               
chr13:14063064-14063256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
403-622
               

               
Cow position:
               
chr13:47317996-47317777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
174, 71
               

               
Conread position:
               
403-675
               

               
Cow position:
               
chr13:62039394-62039117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 213
               

               
Conread position:
               
403-684
               

               
Cow position:
               
chr13:16342321-16342035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
56, 164
               

               
Conread position:
               
403-702
               

               
Cow position:
               
chr13:36716893-36717196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
13, 103
               

               
Conread position:
               
403-722
               

               
Cow position:
               
chr13:54071856-54071541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
90, 74
               

               
Conread position:
               
403-736
               

               
Cow position:
               
chr13:11290377-11290723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
403-736
               

               
Cow position:
               
chr13:32961211-32961535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
403-742
               

               
Cow position:
               
chr13:185944-185601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 211
               

               
Conread position:
               
403-771
               

               
Cow position:
               
chr13:15460364-15460743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
403-858
               

               
Cow position:
               
chr13:19178714-19178251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 187
               

               
Conread position:
               
404-541
               

               
Cow position:
               
chr13:27326235-27326373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:11821748-11821578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:11826073-11825908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:14409666-14409842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:17456838-17457007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:17970564-17970739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:18167447-18167278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:22117035-22116865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:23856671-23856499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:24156301-24156131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:24370837-24370662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:48038559-48038388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:53069941-53069761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:53574432-53574261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:57444620-57444793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 149
               

               
Conread position:
               
404-575
               

               
Cow position:
               
chr13:58719073-58719242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
404-579
               

               
Cow position:
               
chr13:33256950-33256776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
404-582
               

               
Cow position:
               
chr13:3419390-3419202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
60, 17
               

               
Conread position:
               
404-586
               

               
Cow position:
               
chr13:37461270-37461457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
57, 182
               

               
Conread position:
               
404-588
               

               
Cow position:
               
chr13:42201096-42200906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 49
               

               
Conread position:
               
404-590
               

               
Cow position:
               
chr13:31343408-31343598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
60, 134
               

               
Conread position:
               
404-592
               

               
Cow position:
               
chr13:22780422-22780233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
404-593
               

               
Cow position:
               
chr13:48165045-48165236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
177, 102
               

               
Conread position:
               
404-600
               

               
Cow position:
               
chr13:43974400-43974201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
404-602
               

               
Cow position:
               
chr13:7465539-7465338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
404-611
               

               
Cow position:
               
chr13:4487411-4487620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
169, 89
               

               
Conread position:
               
404-621
               

               
Cow position:
               
chr13:2137664-2137447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
170, 74
               

               
Conread position:
               
404-622
               

               
Cow position:
               
chr13:17567556-17567774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
168, 131
               

               
Conread position:
               
404-622
               

               
Cow position:
               
chr13:58313891-58314112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-624
               

               
Cow position:
               
chr13:48945138-48944904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 153
               

               
Conread position:
               
404-628
               

               
Cow position:
               
chr13:4420743-4420516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
404-628
               

               
Cow position:
               
chr13:11148195-11147968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
404-638
               

               
Cow position:
               
chr13:21210361-21210132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
404-651
               

               
Cow position:
               
chr13:31823102-31822848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 222
               

               
Conread position:
               
404-660
               

               
Cow position:
               
chr13:26822572-26822303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
404-667
               

               
Cow position:
               
chr13:12618657-12618919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 141
               

               
Conread position:
               
404-669
               

               
Cow position:
               
chr13:20088123-20088383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
174, 64
               

               
Conread position:
               
404-676
               

               
Cow position:
               
chr13:11129695-11129424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
79, 176
               

               
Conread position:
               
404-677
               

               
Cow position:
               
chr13:21986858-21987140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
10, 44
               

               
Conread position:
               
404-677
               

               
Cow position:
               
chr13:32825974-32826250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
404-681
               

               
Cow position:
               
chr13:1570896-1570621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
181, 52
               

               
Conread position:
               
404-689
               

               
Cow position:
               
chr13:58045417-58045701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
404-691
               

               
Cow position:
               
chr13:21135290-21135586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
13, 234
               

               
Conread position:
               
404-691
               

               
Cow position:
               
chr13:26079884-26079593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
77, 64
               

               
Conread position:
               
404-699
               

               
Cow position:
               
chr13:37558740-37558439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
60, 211
               

               
Conread position:
               
404-699
               

               
Cow position:
               
chr13:51902050-51901747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
404-707
               

               
Cow position:
               
chr13:18908470-18908172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 89
               

               
Conread position:
               
404-710
               

               
Cow position:
               
chr13:20977325-20977013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 135
               

               
Conread position:
               
404-710
               

               
Cow position:
               
chr13:38727063-38727374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
58, 162
               

               
Conread position:
               
404-711
               

               
Cow position:
               
chr13:15350345-15350655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
58, 120
               

               
Conread position:
               
404-712
               

               
Cow position:
               
chr13:45132281-45131985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
404-714
               

               
Cow position:
               
chr13:706491-706798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
175, 228
               

               
Conread position:
               
404-717
               

               
Cow position:
               
chr13:20243305-20243612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
72, 149
               

               
Conread position:
               
404-719
               

               
Cow position:
               
chr13:8961011-8960702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
172, 80
               

               
Conread position:
               
404-722
               

               
Cow position:
               
chr13:6054811-6054485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 55
               

               
Conread position:
               
404-722
               

               
Cow position:
               
chr13:33347497-33347170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
147, 57
               

               
Conread position:
               
404-726
               

               
Cow position:
               
chr13:62517768-62518099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
172, 94
               

               
Conread position:
               
404-729
               

               
Cow position:
               
chr13:33049256-33048928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 47
               

               
Conread position:
               
404-729
               

               
Cow position:
               
chr13:33218634-33218306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 103
               

               
Conread position:
               
404-732
               

               
Cow position:
               
chr13:18944960-18944644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 99
               

               
Conread position:
               
404-732
               

               
Cow position:
               
chr13:24767848-24767487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
404-735
               

               
Cow position:
               
chr13:41607936-41608268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
73, 207
               

               
Conread position:
               
404-736
               

               
Cow position:
               
chr13:3015734-3016071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
404-736
               

               
Cow position:
               
chr13:9692987-9692654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 90
               

               
Conread position:
               
404-736
               

               
Cow position:
               
chr13:24285983-24285657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
404-736
               

               
Cow position:
               
chr13:38897818-38898153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 284
               

               
Conread position:
               
404-736
               

               
Cow position:
               
chr13:47590708-47591047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 80
               

               
Conread position:
               
404-737
               

               
Cow position:
               
chr13:6650826-6651164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
52, 231
               

               
Conread position:
               
404-737
               

               
Cow position:
               
chr13:11571119-11570781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
90, 63
               

               
Conread position:
               
404-737
               

               
Cow position:
               
chr13:25882787-25883129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
57, 224
               

               
Conread position:
               
404-737
               

               
Cow position:
               
chr13:32166872-32167208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
174, 17
               

               
Conread position:
               
404-738
               

               
Cow position:
               
chr13:5492918-5493254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 175
               

               
Conread position:
               
404-738
               

               
Cow position:
               
chr13:11834048-11834378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
59, 32
               

               
Conread position:
               
404-739
               

               
Cow position:
               
chr13:10928559-10928898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 316
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:681609-681959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:4665613-4665958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:11486594-11486939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:21988673-21989014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
229, 10
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:23456660-23457005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:43628691-43629035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
78, 16
               

               
Conread position:
               
404-742
               

               
Cow position:
               
chr13:50189515-50189170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-746
               

               
Cow position:
               
chr13:2466001-2466351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-754
               

               
Cow position:
               
chr13:37122493-37122851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
55, 65
               

               
Conread position:
               
404-754
               

               
Cow position:
               
chr13:50189057-50188700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-756
               

               
Cow position:
               
chr13:30468560-30468201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 241
               

               
Conread position:
               
404-757
               

               
Cow position:
               
chr13:18121316-18120955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-757
               

               
Cow position:
               
chr13:20472701-20472340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-757
               

               
Cow position:
               
chr13:31990439-31990799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 5
               

               
Conread position:
               
404-757
               

               
Cow position:
               
chr13:53156831-53156465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
62, 255
               

               
Conread position:
               
404-758
               

               
Cow position:
               
chr13:5498247-5497887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 67
               

               
Conread position:
               
404-758
               

               
Cow position:
               
chr13:12389821-12389463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-758
               

               
Cow position:
               
chr13:57786290-57786652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-760
               

               
Cow position:
               
chr13:609409-609773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 223
               

               
Conread position:
               
404-760
               

               
Cow position:
               
chr13:14743248-14743601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
84, 178
               

               
Conread position:
               
404-761
               

               
Cow position:
               
chr13:32793782-32793419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
173, 224
               

               
Conread position:
               
404-768
               

               
Cow position:
               
chr13:2725249-2724877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
404-768
               

               
Cow position:
               
chr13:51528014-51528383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 125
               

               
Conread position:
               
404-770
               

               
Cow position:
               
chr13:27985007-27985365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
404-773
               

               
Cow position:
               
chr13:20561531-20561163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
161, 50
               

               
Conread position:
               
404-774
               

               
Cow position:
               
chr13:57769592-57769952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
172, 137
               

               
Conread position:
               
404-775
               

               
Cow position:
               
chr13:12233019-12233395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 339
               

               
Conread position:
               
404-781
               

               
Cow position:
               
chr13:1844694-1845080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 208
               

               
Conread position:
               
404-781
               

               
Cow position:
               
chr13:52585592-52585969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 110
               

               
Conread position:
               
404-781
               

               
Cow position:
               
chr13:52922534-52922145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
141, 64
               

               
Conread position:
               
404-786
               

               
Cow position:
               
chr13:61976535-61976917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
404-789
               

               
Cow position:
               
chr13:1590595-1590204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
404-789
               

               
Cow position:
               
chr13:12990277-12989888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 78
               

               
Conread position:
               
404-789
               

               
Cow position:
               
chr13:31511638-31512031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 301
               

               
Conread position:
               
404-790
               

               
Cow position:
               
chr13:21402357-21402751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
54, 363
               

               
Conread position:
               
404-791
               

               
Cow position:
               
chr13:26382789-26383197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
404-797
               

               
Cow position:
               
chr13:35761136-35761532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 82
               

               
Conread position:
               
404-803
               

               
Cow position:
               
chr13:6945820-6945395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
404-808
               

               
Cow position:
               
chr13:21235258-21235663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 112
               

               
Conread position:
               
404-810
               

               
Cow position:
               
chr13:11808954-11808584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
340, 159
               

               
Conread position:
               
404-813
               

               
Cow position:
               
chr13:34261687-34261248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
404-814
               

               
Cow position:
               
chr13:2414457-2414045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 139
               

               
Conread position:
               
404-814
               

               
Cow position:
               
chr13:9907168-9906750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 66
               

               
Conread position:
               
404-820
               

               
Cow position:
               
chr13:14716901-14717326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
68, 10
               

               
Conread position:
               
404-820
               

               
Cow position:
               
chr13:40943676-40943255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 99
               

               
Conread position:
               
404-823
               

               
Cow position:
               
chr13:20683693-20684114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 64
               

               
Conread position:
               
404-823
               

               
Cow position:
               
chr13:25434697-25435112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 38
               

               
Conread position:
               
404-824
               

               
Cow position:
               
chr13:1636440-1636016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
67, 288
               

               
Conread position:
               
404-825
               

               
Cow position:
               
chr13:5176000-5175568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 216
               

               
Conread position:
               
404-825
               

               
Cow position:
               
chr13:46182206-46181799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
341, 137
               

               
Conread position:
               
404-826
               

               
Cow position:
               
chr13:34262950-34263364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 34
               

               
Conread position:
               
404-827
               

               
Cow position:
               
chr13:25531357-25531785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 44
               

               
Conread position:
               
404-827
               

               
Cow position:
               
chr13:31808946-31808521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 314
               

               
Conread position:
               
404-828
               

               
Cow position:
               
chr13:36346422-36345977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
55, 15
               

               
Conread position:
               
404-830
               

               
Cow position:
               
chr13:9803496-9803073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
57, 222
               

               
Conread position:
               
404-830
               

               
Cow position:
               
chr13:36396735-36397168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 250
               

               
Conread position:
               
404-833
               

               
Cow position:
               
chr13:8636012-8635578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 10
               

               
Conread position:
               
404-833
               

               
Cow position:
               
chr13:32754808-32755237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 113
               

               
Conread position:
               
404-834
               

               
Cow position:
               
chr13:15280846-15281286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 406
               

               
Conread position:
               
404-835
               

               
Cow position:
               
chr13:25062851-25062410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 343
               

               
Conread position:
               
404-835
               

               
Cow position:
               
chr13:31814292-31813873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
404-836
               

               
Cow position:
               
chr13:45353463-45353039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 128
               

               
Conread position:
               
404-842
               

               
Cow position:
               
chr13:17886912-17886495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
180, 68
               

               
Conread position:
               
404-848
               

               
Cow position:
               
chr13:17820830-17821281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 74
               

               
Conread position:
               
404-848
               

               
Cow position:
               
chr13:20665958-20666400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 64
               

               
Conread position:
               
404-848
               

               
Cow position:
               
chr13:41807185-41806761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
174, 36
               

               
Conread position:
               
404-850
               

               
Cow position:
               
chr13:3162930-3162480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 211
               

               
Conread position:
               
404-850
               

               
Cow position:
               
chr13:12682108-12682559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 416
               

               
Conread position:
               
404-850
               

               
Cow position:
               
chr13:17800506-17800058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 36
               

               
Conread position:
               
404-850
               

               
Cow position:
               
chr13:21107570-21107126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
59, 252
               

               
Conread position:
               
404-850
               

               
Cow position:
               
chr13:22085326-22085759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 216
               

               
Conread position:
               
404-850
               

               
Cow position:
               
chr13:38283551-38283991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 360
               

               
Conread position:
               
404-853
               

               
Cow position:
               
chr13:12977988-12977549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 51
               

               
Conread position:
               
404-855
               

               
Cow position:
               
chr13:1458903-1458465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
173, 58
               

               
Conread position:
               
404-856
               

               
Cow position:
               
chr13:20175172-20174730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 266
               

               
Conread position:
               
404-857
               

               
Cow position:
               
chr13:1155275-1155724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 333
               

               
Conread position:
               
404-857
               

               
Cow position:
               
chr13:34375688-34375239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
404-865
               

               
Cow position:
               
chr13:20377909-20378366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 143
               

               
Conread position:
               
404-866
               

               
Cow position:
               
chr13:47215820-47216285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 145
               

               
Conread position:
               
404-867
               

               
Cow position:
               
chr13:42114443-42113983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 94
               

               
Conread position:
               
404-907
               

               
Cow position:
               
chr13:29092022-29092523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
23, 16
               

               
Conread position:
               
404-908
               

               
Cow position:
               
chr13:19426265-19426774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 285
               

               
Conread position:
               
405-575
               

               
Cow position:
               
chr13:38013110-38012934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
405-588
               

               
Cow position:
               
chr13:12203110-12202929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
173, 101
               

               
Conread position:
               
405-606
               

               
Cow position:
               
chr13:16025166-16024956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
405-677
               

               
Cow position:
               
chr13:28094295-28094023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
138, 57
               

               
Conread position:
               
405-726
               

               
Cow position:
               
chr13:22570978-22570641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
108, 230
               

               
Conread position:
               
405-753
               

               
Cow position:
               
chr13:52010154-52010503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 218
               

               
Conread position:
               
405-768
               

               
Cow position:
               
chr13:23444374-23444744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 147
               

               
Conread position:
               
405-776
               

               
Cow position:
               
chr13:43802798-43803172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
405-850
               

               
Cow position:
               
chr13:3701863-3701425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 88
               

               
Conread position:
               
405-850
               

               
Cow position:
               
chr13:16248088-16247644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 170
               

               
Conread position:
               
406-578
               

               
Cow position:
               
chr13:54095287-54095108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
406-602
               

               
Cow position:
               
chr13:5278542-5278741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
406-623
               

               
Cow position:
               
chr13:23617710-23617931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
406-732
               

               
Cow position:
               
chr13:16243672-16243326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
406-805
               

               
Cow position:
               
chr13:4553226-4552829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 99
               

               
Conread position:
               
406-824
               

               
Cow position:
               
chr13:34333517-34333929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
55, 9
               

               
Conread position:
               
406-826
               

               
Cow position:
               
chr13:37516709-37517131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 62
               

               
Conread position:
               
406-851
               

               
Cow position:
               
chr13:20863591-20864030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 84
               

               
Conread position:
               
407-610
               

               
Cow position:
               
chr13:20597069-20597272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
169, 175
               

               
Conread position:
               
407-646
               

               
Cow position:
               
chr13:54864624-54864872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
53, 149
               

               
Conread position:
               
407-776
               

               
Cow position:
               
chr13:20440171-20440529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 221
               

               
Conread position:
               
407-815
               

               
Cow position:
               
chr13:15162243-15162636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 68
               

               
Conread position:
               
407-828
               

               
Cow position:
               
chr13:54237767-54237360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 125
               

               
Conread position:
               
408-575
               

               
Cow position:
               
chr13:34930673-34930846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
408-586
               

               
Cow position:
               
chr13:34994499-34994683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
408-588
               

               
Cow position:
               
chr13:35660214-35660033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
408-598
               

               
Cow position:
               
chr13:18002858-18003049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
168, 81
               

               
Conread position:
               
408-602
               

               
Cow position:
               
chr13:23669593-23669399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
168, 62
               

               
Conread position:
               
408-707
               

               
Cow position:
               
chr13:21126647-21126949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 271
               

               
Conread position:
               
408-719
               

               
Cow position:
               
chr13:46465655-46465347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
54, 173
               

               
Conread position:
               
408-737
               

               
Cow position:
               
chr13:3480181-3479837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
408-743
               

               
Cow position:
               
chr13:2475730-2476071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
57, 130
               

               
Conread position:
               
408-850
               

               
Cow position:
               
chr13:13766183-13765772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
337, 64
               

               
Conread position:
               
408-850
               

               
Cow position:
               
chr13:19882610-19883050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
270, 211
               

               
Conread position:
               
408-893
               

               
Cow position:
               
chr13:4045465-4045940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
68, 244
               

               
Conread position:
               
409-572
               

               
Cow position:
               
chr13:52593993-52594156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
73, 63
               

               
Conread position:
               
409-575
               

               
Cow position:
               
chr13:15622287-15622121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
409-582
               

               
Cow position:
               
chr13:34299135-34299313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 42
               

               
Conread position:
               
409-597
               

               
Cow position:
               
chr13:31312709-31312899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
409-623
               

               
Cow position:
               
chr13:6919277-6919060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 19
               

               
Conread position:
               
409-684
               

               
Cow position:
               
chr13:56526900-56527170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
163, 58
               

               
Conread position:
               
409-707
               

               
Cow position:
               
chr13:18836039-18836340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
53, 92
               

               
Conread position:
               
409-760
               

               
Cow position:
               
chr13:30794247-30793890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 12
               

               
Conread position:
               
409-776
               

               
Cow position:
               
chr13:35525784-35526152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 285
               

               
Conread position:
               
409-835
               

               
Cow position:
               
chr13:15872875-15872443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 69
               

               
Conread position:
               
409-858
               

               
Cow position:
               
chr13:34282108-34281652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 332
               

               
Conread position:
               
410-657
               

               
Cow position:
               
chr13:50417482-50417229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 155
               

               
Conread position:
               
410-702
               

               
Cow position:
               
chr13:26073362-26073067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
54, 235
               

               
Conread position:
               
410-708
               

               
Cow position:
               
chr13:54286343-54286638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
410-850
               

               
Cow position:
               
chr13:43762598-43762155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 133
               

               
Conread position:
               
411-600
               

               
Cow position:
               
chr13:19022673-19022481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
165, 0
               

               
Conread position:
               
411-622
               

               
Cow position:
               
chr13:30926188-30925973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
411-702
               

               
Cow position:
               
chr13:47570741-47571037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
47, 41
               

               
Conread position:
               
411-742
               

               
Cow position:
               
chr13:4035561-4035233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
411-748
               

               
Cow position:
               
chr13:21836739-21836396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
411-758
               

               
Cow position:
               
chr13:8172833-8172477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
411-759
               

               
Cow position:
               
chr13:33522393-33522040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
163, 66
               

               
Conread position:
               
411-759
               

               
Cow position:
               
chr13:60646022-60645667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
412-592
               

               
Cow position:
               
chr13:43594659-43594846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
412-614
               

               
Cow position:
               
chr13:17613022-17612819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
70, 60
               

               
Conread position:
               
412-736
               

               
Cow position:
               
chr13:24373835-24373496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
412-789
               

               
Cow position:
               
chr13:28413722-28413340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 205
               

               
Conread position:
               
412-825
               

               
Cow position:
               
chr13:15869543-15869129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 24
               

               
Conread position:
               
412-856
               

               
Cow position:
               
chr13:20893215-20893654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 264
               

               
Conread position:
               
412-857
               

               
Cow position:
               
chr13:20605694-20606137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
413-758
               

               
Cow position:
               
chr13:58465603-58465250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
164, 55
               

               
Conread position:
               
413-856
               

               
Cow position:
               
chr13:50689968-50690416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 402
               

               
Conread position:
               
415-732
               

               
Cow position:
               
chr13:19396770-19396451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
164, 71
               

               
Conread position:
               
415-737
               

               
Cow position:
               
chr13:17270398-17270053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 91
               

               
Conread position:
               
415-737
               

               
Cow position:
               
chr13:21255927-21256256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
63, 212
               

               
Conread position:
               
415-750
               

               
Cow position:
               
chr13:16128243-16127899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 150
               

               
Conread position:
               
415-814
               

               
Cow position:
               
chr13:61170303-61170704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 67
               

               
Conread position:
               
415-848
               

               
Cow position:
               
chr13:13261437-13260989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 346
               

               
Conread position:
               
416-822
               

               
Cow position:
               
chr13:14544532-14544127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 145
               

               
Conread position:
               
417-760
               

               
Cow position:
               
chr13:32151980-32151639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 15
               

               
Conread position:
               
417-828
               

               
Cow position:
               
chr13:60974484-60974088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 9
               

               
Conread position:
               
420-588
               

               
Cow position:
               
chr13:2339972-2339804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
420-705
               

               
Cow position:
               
chr13:39827152-39826872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
155, 121
               

               
Conread position:
               
421-735
               

               
Cow position:
               
chr13:7010884-7010564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
421-791
               

               
Cow position:
               
chr13:54062940-54063310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
159, 21
               

               
Conread position:
               
421-824
               

               
Cow position:
               
chr13:1232065-1231653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 51
               

               
Conread position:
               
421-828
               

               
Cow position:
               
chr13:3003860-3003444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 0
               

               
Conread position:
               
422-676
               

               
Cow position:
               
chr13:33160595-33160858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
422-684
               

               
Cow position:
               
chr13:9900718-9900452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 25
               

               
Conread position:
               
422-789
               

               
Cow position:
               
chr13:33162794-33163169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
423-574
               

               
Cow position:
               
chr13:62601756-62601907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
423-582
               

               
Cow position:
               
chr13:48334412-48334577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
423-653
               

               
Cow position:
               
chr13:21282062-21282292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
153, 159
               

               
Conread position:
               
423-680
               

               
Cow position:
               
chr13:34190793-34191059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
423-736
               

               
Cow position:
               
chr13:17439159-17439463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
153, 209
               

               
Conread position:
               
423-781
               

               
Cow position:
               
chr13:37947601-37947950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 185
               

               
Conread position:
               
423-789
               

               
Cow position:
               
chr13:33876077-33875711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 270
               

               
Conread position:
               
423-810
               

               
Cow position:
               
chr13:12546492-12546890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 53
               

               
Conread position:
               
423-821
               

               
Cow position:
               
chr13:52894541-52894156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
323, 137
               

               
Conread position:
               
423-855
               

               
Cow position:
               
chr13:13516963-13516528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
156, 203
               

               
Conread position:
               
424-748
               

               
Cow position:
               
chr13:3319795-3320124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 42
               

               
Conread position:
               
424-753
               

               
Cow position:
               
chr13:8202476-8202804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 90
               

               
Conread position:
               
424-753
               

               
Cow position:
               
chr13:33351963-33352284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
320, 28
               

               
Conread position:
               
424-768
               

               
Cow position:
               
chr13:8690546-8690195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
35, 44
               

               
Conread position:
               
424-789
               

               
Cow position:
               
chr13:45355689-45355323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
131, 46
               

               
Conread position:
               
425-572
               

               
Cow position:
               
chr13:19217545-19217692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
425-636
               

               
Cow position:
               
chr13:44161502-44161282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
425-742
               

               
Cow position:
               
chr13:5028687-5029011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
152, 229
               

               
Conread position:
               
425-850
               

               
Cow position:
               
chr13:18215842-18215431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 125
               

               
Conread position:
               
426-688
               

               
Cow position:
               
chr13:3143649-3143387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 195
               

               
Conread position:
               
426-742
               

               
Cow position:
               
chr13:53531121-53531444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
426-831
               

               
Cow position:
               
chr13:44278763-44278353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 119
               

               
Conread position:
               
426-851
               

               
Cow position:
               
chr13:41918756-41919173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 18
               

               
Conread position:
               
427-716
               

               
Cow position:
               
chr13:20777264-20776972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
150, 226
               

               
Conread position:
               
427-750
               

               
Cow position:
               
chr13:15591727-15592048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
427-820
               

               
Cow position:
               
chr13:21155084-21155483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 11
               

               
Conread position:
               
432-601
               

               
Cow position:
               
chr13:60875498-60875332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
432-737
               

               
Cow position:
               
chr13:62018679-62018998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
432-742
               

               
Cow position:
               
chr13:62027691-62028006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
432-757
               

               
Cow position:
               
chr13:1568703-1568370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
50, 40
               

               
Conread position:
               
432-772
               

               
Cow position:
               
chr13:52057943-52057608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
190, 248
               

               
Conread position:
               
432-810
               

               
Cow position:
               
chr13:34555943-34556315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 156
               

               
Conread position:
               
432-850
               

               
Cow position:
               
chr13:20649583-20649999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 81
               

               
Conread position:
               
433-646
               

               
Cow position:
               
chr13:8651852-8652071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 61
               

               
Conread position:
               
433-680
               

               
Cow position:
               
chr13:28570249-28569987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
433-731
               

               
Cow position:
               
chr13:57407373-57407068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
49, 39
               

               
Conread position:
               
433-742
               

               
Cow position:
               
chr13:491784-491470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
139, 39
               

               
Conread position:
               
433-772
               

               
Cow position:
               
chr13:56154761-56155097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 39
               

               
Conread position:
               
433-797
               

               
Cow position:
               
chr13:40657390-40657762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
91, 274
               

               
Conread position:
               
433-871
               

               
Cow position:
               
chr13:38562348-38561907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
434-736
               

               
Cow position:
               
chr13:36264367-36264060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
434-827
               

               
Cow position:
               
chr13:12044938-12045332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 167
               

               
Conread position:
               
434-848
               

               
Cow position:
               
chr13:56686834-56686421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 251
               

               
Conread position:
               
436-575
               

               
Cow position:
               
chr13:606610-606748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
436-742
               

               
Cow position:
               
chr13:42249675-42249988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
437-736
               

               
Cow position:
               
chr13:661233-661539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 114
               

               
Conread position:
               
437-742
               

               
Cow position:
               
chr13:3710250-3709938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
438-757
               

               
Cow position:
               
chr13:27475567-27475240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 34
               
UCSC Genome Browser

               
Conread position:
               
441-806
               

               
Cow position:
               
chr13:9974664-9975051 (view  custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
26, 114
               
UCSC Genome Browser

               
               
               
Conread position:
441-856

               
               
               
Cow position:
chr13:34728444-34728866 (view  custom track)

               
               
               
Alignm length:
427

               
               
               
Alignm identity:
310

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
144, 174
UCSC Genome Browser

               
               
               
Conread position:
442-833

               
               
               
Cow position:
chr13:995674-996067 (view  custom track)

               
               
               
Alignm length:
403

               
               
               
Alignm identity:
281

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
135, 212

               
               
               Conread position:444-712
               
               
               Cow position:chr13:24119958-24119668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):129, 38

               
               
               Conread position:444-737
               
               
               Cow position:chr13:24695757-24695460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:444-759
               
               
               Cow position:chr13:48629381-48629068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 118

               
               
               Conread position:445-760
               
               
               Cow position:chr13:13904001-13904324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:225
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):132, 209

               
               
               Conread position:446-753
               
               
               Cow position:chr13:52284298-52283986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 9

               
               
               Conread position:446-757
               
               
               Cow position:chr13:8782708-8783026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:446-837
               
               
               Cow position:chr13:6606629-6607028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 373

               
               
               Conread position:447-737
               
               
               Cow position:chr13:2186248-2186531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 82

               
               
               Conread position:449-760
               
               
               Cow position:chr13:3356422-3356741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:450-732
               
               
               Cow position:chr13:46516449-46516174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:451-611
               
               
               Cow position:chr13:6141335-6141498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:451-738
               
               
               Cow position:chr13:32921433-32921145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):126, 175

               
               
               Conread position:451-789
               
               
               Cow position:chr13:42860187-42860527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 131

               
               
               Conread position:455-730
               
               
               Cow position:chr13:52637663-52637385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:455-785
               
               
               Cow position:chr13:6086519-6086853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 161

               
               
               Conread position:456-617
               
               
               Cow position:chr13:6740151-6739984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:457-822
               
               
               Cow position:chr13:2774496-2774138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 18

               
               
               Conread position:457-858
               
               
               Cow position:chr13:17855752-17855351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 105

               
               
               Conread position:458-616
               
               
               Cow position:chr13:5608324-5608163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:460-789
               
               
               Cow position:chr13:27018989-27018657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 7

               
               
               Conread position:460-790
               
               
               Cow position:chr13:18567139-18567476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):113, 8

               
               
               Conread position:460-810
               
               
               Cow position:chr13:18835563-18835213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 228

               
               
               Conread position:461-737
               
               
               Cow position:chr13:51856262-51856543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:461-742
               
               
               Cow position:chr13:16922492-16922780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:461-789
               
               
               Cow position:chr13:58320646-58320323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):272, 140

               
               
               Conread position:461-797
               
               
               Cow position:chr13:43119684-43119343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):115, 145

               
               
               Conread position:461-807
               
               
               Cow position:chr13:20820462-20820810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 164

               
               
               Conread position:462-848
               
               
               Cow position:chr13:12670082-12670462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 94

               
               
               Conread position:463-644
               
               
               Cow position:chr13:25892126-25892307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:463-856
               
               
               Cow position:chr13:30799096-30798703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 211

               
               
               Conread position:467-752
               
               
               Cow position:chr13:43911291-43911584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):105, 187

               
               
               Conread position:467-850
               
               
               Cow position:chr13:12875614-12875988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 206

               
               
               Conread position:468-660
               
               
               Cow position:chr13:12940922-12940727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:468-814
               
               
               Cow position:chr13:10988705-10989059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 156

               
               
               Conread position:469-780
               
               
               Cow position:chr13:32949638-32949957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):228, 0

               
               
               Conread position:469-808
               
               
               Cow position:chr13:21708549-21708208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 269

               
               
               Conread position:469-817
               
               
               Cow position:chr13:1170835-1170481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 48

               
               
               Conread position:469-827
               
               
               Cow position:chr13:42839171-42839536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:469-857
               
               
               Cow position:chr13:44626746-44626348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:276
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):67, 106

               
               
               Conread position:470-776
               
               
               Cow position:chr13:60436511-60436828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:472-676
               
               
               Cow position:chr13:1915630-1915424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 40

               
               
               Conread position:472-742
               
               
               Cow position:chr13:3692951-3693229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:472-742
               
               
               Cow position:chr13:3993490-3993212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):10, 183

               
               
               Conread position:472-742
               
               
               Cow position:chr13:44189942-44190220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:472-742
               
               
               Cow position:chr13:52316858-52316580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):10, 183

               
               
               Conread position:476-724
               
               
               Cow position:chr13:16953033-16952785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:183
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:476-803
               
               
               Cow position:chr13:16270297-16269951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:244
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):74, 184

               
               
               Conread position:477-677
               
               
               Cow position:chr13:62135834-62135632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:477-731
               
               
               Cow position:chr13:5938864-5939123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):96, 178

               
               
               Conread position:477-733
               
               
               Cow position:chr13:43384276-43384537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):99, 126

               
               
               Conread position:477-736
               
               
               Cow position:chr13:19289308-19289062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):210, 66

               
               
               Conread position:477-737
               
               
               Cow position:chr13:57027972-57028235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 259

               
               
               Conread position:477-818
               
               
               Cow position:chr13:21276216-21275870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 289

               
               
               Conread position:477-834
               
               
               Cow position:chr13:38329992-38329623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 70

               
               
               Conread position:477-856
               
               
               Cow position:chr13:40652293-40651915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 260

               
               
               Conread position:478-622
               
               
               Cow position:chr13:4477755-4477903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:478-622
               
               
               Cow position:chr13:52090714-52090861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:478-658
               
               
               Cow position:chr13:34904871-34904694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):100, 32

               
               
               Conread position:478-659
               
               
               Cow position:chr13:22980624-22980441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):98, 59

               
               
               Conread position:478-728
               
               
               Cow position:chr13:50079111-50078856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:478-731
               
               
               Cow position:chr13:15657168-15657427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):94, 12

               
               
               Conread position:478-736
               
               
               Cow position:chr13:10755273-10755013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):98, 142

               
               
               Conread position:478-742
               
               
               Cow position:chr13:20327306-20327576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):94, 176

               
               
               Conread position:478-743
               
               
               Cow position:chr13:265504-265231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:478-757
               
               
               Cow position:chr13:12990997-12990710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):94, 144

               
               
               Conread position:478-757
               
               
               Cow position:chr13:14215363-14215080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):99, 176

               
               
               Conread position:478-758
               
               
               Cow position:chr13:52433272-52433558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 176

               
               
               Conread position:478-759
               
               
               Cow position:chr13:20527351-20527065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):122, 179

               
               
               Conread position:478-768
               
               
               Cow position:chr13:52019658-52019360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):94, 176

               
               
               Conread position:478-772
               
               
               Cow position:chr13:47547932-47548227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):98, 128

               
               
               Conread position:478-804
               
               
               Cow position:chr13:43629404-43629750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):14, 227

               
               
               Conread position:478-809
               
               
               Cow position:chr13:53566943-53566618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 69

               
               
               Conread position:478-814
               
               
               Cow position:chr13:17158505-17158858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 270

               
               
               Conread position:478-825
               
               
               Cow position:chr13:562778-563136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 265

               
               
               Conread position:478-825
               
               
               Cow position:chr13:23269854-23270202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 230

               
               
               Conread position:478-829
               
               
               Cow position:chr13:42229679-42229320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:478-834
               
               
               Cow position:chr13:5041136-5041495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:251
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):99, 176

               
               
               Conread position:478-839
               
               
               Cow position:chr13:39952055-39952426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:252
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):94, 118

               
               
               Conread position:478-850
               
               
               Cow position:chr13:1042597-1042982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 345

               
               
               Conread position:479-751
               
               
               Cow position:chr13:41360107-41359833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):99, 67

               
               
               Conread position:479-757
               
               
               Cow position:chr13:4024232-4023941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 143

               
               
               Conread position:479-778
               
               
               Cow position:chr13:11820935-11820650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):97, 126

               
               
               Conread position:479-789
               
               
               Cow position:chr13:9049215-9049527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):97, 192

               
               
               Conread position:479-807
               
               
               Cow position:chr13:16292899-16292567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 38

               
               
               Conread position:479-825
               
               
               Cow position:chr13:18351201-18350844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):83, 247

               
               
               Conread position:479-835
               
               
               Cow position:chr13:1767127-1766765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):98, 131

               
               
               Conread position:480-674
               
               
               Cow position:chr13:28653188-28652992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):97, 142

               
               
               Conread position:480-743
               
               
               Cow position:chr13:17786998-17787259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):93, 189

               
               
               Conread position:480-850
               
               
               Cow position:chr13:8362389-8362763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 315

               
               
               Conread position:481-821
               
               
               Cow position:chr13:8609196-8609541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):97, 25

               
               
               Conread position:482-828
               
               
               Cow position:chr13:61547648-61547990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:249
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):97, 75

               
               
               Conread position:483-646
               
               
               Cow position:chr13:5078631-5078797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:483-760
               
               
               Cow position:chr13:7504603-7504882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):195, 121

               
               
               Conread position:486-810
               
               
               Cow position:chr13:46458987-46458643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):90, 275

               
               
               Conread position:487-628
               
               
               Cow position:chr13:5229576-5229433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:487-654
               
               
               Cow position:chr13:37946628-37946791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:487-731
               
               
               Cow position:chr13:22076426-22076185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):89, 202

               
               
               Conread position:487-778
               
               
               Cow position:chr13:152293-152010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:487-788
               
               
               Cow position:chr13:6749223-6748923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 134

               
               
               Conread position:487-789
               
               
               Cow position:chr13:14816004-14815694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):90, 167

               
               
               Conread position:487-825
               
               
               Cow position:chr13:15958967-15958627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:488-605
               
               
               Cow position:chr13:46606138-46606258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:488-622
               
               
               Cow position:chr13:42853790-42853933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:488-700
               
               
               Cow position:chr13:53310365-53310580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:488-704
               
               
               Cow position:chr13:11774395-11774610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):209, 16

               
               
               Conread position:488-742
               
               
               Cow position:chr13:40926963-40926702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 166

               
               
               Conread position:488-753
               
               
               Cow position:chr13:31756976-31756709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):86, 94

               
               
               Conread position:488-757
               
               
               Cow position:chr13:34021719-34021442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 166

               
               
               Conread position:488-758
               
               
               Cow position:chr13:34212387-34212665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):84, 166

               
               
               Conread position:488-758
               
               
               Cow position:chr13:53208314-53208592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):84, 166

               
               
               Conread position:488-768
               
               
               Cow position:chr13:32524223-32523936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):84, 166

               
               
               Conread position:488-797
               
               
               Cow position:chr13:3649152-3648837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:224
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):89, 166

               
               
               Conread position:488-827
               
               
               Cow position:chr13:17613695-17613347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 325

               
               
               Conread position:488-850
               
               
               Cow position:chr13:21175974-21176335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:489-640
               
               
               Cow position:chr13:13803170-13803324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:490-685
               
               
               Cow position:chr13:5031706-5031903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):74, 9

               
               
               Conread position:491-760
               
               
               Cow position:chr13:28140194-28140471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):82, 99

               
               
               Conread position:492-705
               
               
               Cow position:chr13:32870307-32870099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 65

               
               
               Conread position:492-736
               
               
               Cow position:chr13:15957150-15956898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:493-622
               
               
               Cow position:chr13:54053271-54053403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:493-676
               
               
               Cow position:chr13:62169200-62169383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):133, 86

               
               
               Conread position:493-722
               
               
               Cow position:chr13:2789617-2789846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):87, 5

               
               
               Conread position:493-736
               
               
               Cow position:chr13:15580195-15579945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):79, 5

               
               
               Conread position:493-789
               
               
               Cow position:chr13:42690352-42690062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):27, 47

               
               
               Conread position:493-814
               
               
               Cow position:chr13:32717528-32717857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:231
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):83, 34

               
               
               Conread position:493-826
               
               
               Cow position:chr13:8838654-8838982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 30

               
               
               Conread position:494-835
               
               
               Cow position:chr13:28139889-28139564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):83, 115

               
               
               Conread position:494-864
               
               
               Cow position:chr13:13266144-13265780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 55

               
               
               Conread position:495-659
               
               
               Cow position:chr13:13283804-13283644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:495-708
               
               
               Cow position:chr13:12480449-12480672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:495-731
               
               
               Cow position:chr13:8136227-8136472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):78, 161

               
               
               Conread position:495-810
               
               
               Cow position:chr13:32017181-32017505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:498-677
               
               
               Cow position:chr13:37636359-37636178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:498-677
               
               
               Cow position:chr13:41901874-41901695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:498-712
               
               
               Cow position:chr13:55255613-55255820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):94, 41

               
               
               Conread position:498-750
               
               
               Cow position:chr13:39487008-39487261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):164, 122

               
               
               Conread position:498-783
               
               
               Cow position:chr13:4038205-4037930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):242, 55

               
               
               Conread position:498-827
               
               
               Cow position:chr13:12448649-12448990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 126

               
               
               Conread position:498-835
               
               
               Cow position:chr13:15288593-15288927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:499-722
               
               
               Cow position:chr13:6189293-6189520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:499-742
               
               
               Cow position:chr13:50192773-50192524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):75, 40

               
               
               Conread position:499-778
               
               
               Cow position:chr13:21009013-21008721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):79, 259

               
               
               Conread position:500-728
               
               
               Cow position:chr13:35008642-35008873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):195, 75

               
               
               Conread position:500-736
               
               
               Cow position:chr13:48627079-48626847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:500-780
               
               
               Cow position:chr13:34508213-34507922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:500-780
               
               
               Cow position:chr13:39950183-39950459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):81, 92

               
               
               Conread position:500-783
               
               
               Cow position:chr13:43138892-43139176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 128

               
               
               Conread position:500-851
               
               
               Cow position:chr13:889847-890185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):236, 84

               
               
               Conread position:500-851
               
               
               Cow position:chr13:33517571-33517940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 252

               
               
               Conread position:500-857
               
               
               Cow position:chr13:45604075-45604436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:264
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):78, 269

               
               
               Conread position:501-707
               
               
               Cow position:chr13:60156568-60156360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):76, 206

               
               
               Conread position:501-742
               
               
               Cow position:chr13:3557229-3557475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):71, 153

               
               
               Conread position:504-757
               
               
               Cow position:chr13:37320585-37320846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:505-646
               
               
               Cow position:chr13:5447834-5447692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):68, 84

               
               
               Conread position:505-737
               
               
               Cow position:chr13:18963320-18963082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 48

               
               
               Conread position:505-753
               
               
               Cow position:chr13:13344288-13344034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 161

               
               
               Conread position:505-754
               
               
               Cow position:chr13:8473306-8473050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):69, 5

               
               
               Conread position:505-810
               
               
               Cow position:chr13:19138769-19138463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:219
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):73, 195

               
               
               Conread position:505-813
               
               
               Cow position:chr13:26479885-26480195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):250, 173

               
               
               Conread position:505-822
               
               
               Cow position:chr13:17622616-17622294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 163

               
               
               Conread position:506-622
               
               
               Cow position:chr13:3861784-3861664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:506-760
               
               
               Cow position:chr13:10754890-10754625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:506-779
               
               
               Cow position:chr13:46525110-46525391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 126

               
               
               Conread position:506-809
               
               
               Cow position:chr13:13321111-13320816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):66, 153

               
               
               Conread position:506-816
               
               
               Cow position:chr13:37980320-37980623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):67, 104

               
               
               Conread position:506-825
               
               
               Cow position:chr13:6153448-6153777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 198

               
               
               Conread position:506-825
               
               
               Cow position:chr13:37981421-37981738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 120

               
               
               Conread position:506-850
               
               
               Cow position:chr13:11260581-11260253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):87, 120

               
               
               Conread position:507-737
               
               
               Cow position:chr13:4208488-4208721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):67, 119

               
               
               Conread position:507-742
               
               
               Cow position:chr13:12395354-12395112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):65, 147

               
               
               Conread position:507-789
               
               
               Cow position:chr13:38485148-38484876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:207
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):233, 33

               
               
               Conread position:508-712
               
               
               Cow position:chr13:16114579-16114379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 99

               
               
               Conread position:509-736
               
               
               Cow position:chr13:20834529-20834759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:509-742
               
               
               Cow position:chr13:19274926-19275173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 152

               
               
               Conread position:510-699
               
               
               Cow position:chr13:25332492-25332685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:510-720
               
               
               Cow position:chr13:1000879-1000666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):67, 153

               
               
               Conread position:510-742
               
               
               Cow position:chr13:18268165-18268404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 144

               
               
               Conread position:510-742
               
               
               Cow position:chr13:57482980-57483219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 144

               
               
               Conread position:510-757
               
               
               Cow position:chr13:40813456-40813201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:510-766
               
               
               Cow position:chr13:49283015-49283276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):68, 126

               
               
               Conread position:510-768
               
               
               Cow position:chr13:35533149-35532898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:511-760
               
               
               Cow position:chr13:5867886-5868141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):67, 105

               
               
               Conread position:511-858
               
               
               Cow position:chr13:21039277-21039624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 66

               
               
               Conread position:512-750
               
               
               Cow position:chr13:21524750-21524509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:189
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):62, 110

               
               
               Conread position:512-837
               
               
               Cow position:chr13:15172084-15172414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 300

               
               
               Conread position:512-839
               
               
               Cow position:chr13:2884375-2884041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):183, 152

               
               
               Conread position:512-847
               
               
               Cow position:chr13:5091337-5091680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 38

               
               
               Conread position:513-737
               
               
               Cow position:chr13:32773671-32773462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:513-768
               
               
               Cow position:chr13:22195927-22195669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 141

               
               
               Conread position:513-818
               
               
               Cow position:chr13:36948846-36949161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:514-735
               
               
               Cow position:chr13:35853029-35853254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:515-681
               
               
               Cow position:chr13:47599688-47599522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:516-742
               
               
               Cow position:chr13:34932561-34932794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:517-756
               
               
               Cow position:chr13:56148860-56148614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:187
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:517-756
               
               
               Cow position:chr13:56160107-56160353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):50, 106

               
               
               Conread position:519-781
               
               
               Cow position:chr13:57323773-57323507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 31

               
               
               Conread position:519-789
               
               
               Cow position:chr13:27524944-27525220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 103

               
               
               Conread position:519-858
               
               
               Cow position:chr13:17291816-17292159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):159, 100

               
               
               Conread position:520-724
               
               
               Cow position:chr13:28558551-28558340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:520-735
               
               
               Cow position:chr13:29819921-29820144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:520-758
               
               
               Cow position:chr13:3144662-3144416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:520-822
               
               
               Cow position:chr13:44202306-44202007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 191

               
               
               Conread position:520-830
               
               
               Cow position:chr13:9125990-9125671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):58, 136

               
               
               Conread position:520-835
               
               
               Cow position:chr13:13089344-13089022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:239
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:520-857
               
               
               Cow position:chr13:20683263-20682929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 144

               
               
               Conread position:521-758
               
               
               Cow position:chr13:5119076-5119321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:523-737
               
               
               Cow position:chr13:20270907-20271117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:166
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:523-742
               
               
               Cow position:chr13:36537648-36537874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):49, 131

               
               
               Conread position:523-789
               
               
               Cow position:chr13:47073826-47074101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:523-825
               
               
               Cow position:chr13:37382125-37381807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:523-856
               
               
               Cow position:chr13:7415724-7416060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):53, 142

               
               
               Conread position:524-737
               
               
               Cow position:chr13:19119310-19119095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 152

               
               
               Conread position:524-821
               
               
               Cow position:chr13:55843797-55843490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):54, 303

               
               
               Conread position:524-857
               
               
               Cow position:chr13:34035681-34035346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):54, 275

               
               
               Conread position:525-844
               
               
               Cow position:chr13:25261480-25261819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:255
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):49, 207

               
               
               Conread position:527-732
               
               
               Cow position:chr13:8779702-8779496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):53, 9

               
               
               Conread position:527-803
               
               
               Cow position:chr13:20813973-20814253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 222

               
               
               Conread position:527-803
               
               
               Cow position:chr13:20816620-20816340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 222

               
               
               Conread position:527-825
               
               
               Cow position:chr13:52178408-52178115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):51, 155

               
               
               Conread position:527-857
               
               
               Cow position:chr13:13306412-13306072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:527-858
               
               
               Cow position:chr13:47756684-47756348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 291

               
               
               Conread position:529-728
               
               
               Cow position:chr13:3994234-3994440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:529-742
               
               
               Cow position:chr13:39202995-39203215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):45, 125

               
               
               Conread position:530-789
               
               
               Cow position:chr13:17977641-17977385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:530-855
               
               
               Cow position:chr13:51332162-51331835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 96

               
               
               Conread position:533-708
               
               
               Cow position:chr13:548822-548650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:533-788
               
               
               Cow position:chr13:15740367-15740109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 93

               
               
               Conread position:533-791
               
               
               Cow position:chr13:14927541-14927278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:198
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:533-825
               
               
               Cow position:chr13:32283423-32283134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):145, 22

               
               
               Conread position:534-744
               
               
               Cow position:chr13:48378269-48378487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:534-754
               
               
               Cow position:chr13:39912343-39912573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:534-789
               
               
               Cow position:chr13:23460334-23460595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):43, 150

               
               
               Conread position:535-712
               
               
               Cow position:chr13:54080502-54080681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:535-789
               
               
               Cow position:chr13:34113229-34113487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):179, 169

               
               
               Conread position:535-810
               
               
               Cow position:chr13:52285111-52284829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):139, 16

               
               
               Conread position:535-850
               
               
               Cow position:chr13:9142584-9142266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:537-776
               
               
               Cow position:chr13:15234206-15233972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:537-907
               
               
               Cow position:chr13:37698345-37697976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 253

               
               
               Conread position:538-789
               
               
               Cow position:chr13:23199507-23199248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:539-789
               
               
               Cow position:chr13:17994231-17993974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):38, 156

               
               
               Conread position:539-850
               
               
               Cow position:chr13:25817811-25817513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):39, 147

               
               
               Conread position:542-832
               
               
               Cow position:chr13:43194467-43194180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:200
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 35

               
               
               Conread position:543-768
               
               
               Cow position:chr13:8824560-8824335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:546-820
               
               
               Cow position:chr13:21194230-21194497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):187, 85

               
               
               Conread position:547-742
               
               
               Cow position:chr13:38872685-38872875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:547-789
               
               
               Cow position:chr13:51821598-51821845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):31, 35

               
               
               Conread position:547-801
               
               
               Cow position:chr13:18989995-18989744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):31, 173

               
               
               Conread position:547-828
               
               
               Cow position:chr13:33191206-33190917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:193
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:549-762
               
               
               Cow position:chr13:12574922-12574705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:549-766
               
               
               Cow position:chr13:27017101-27017315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 73

               
               
               Conread position:550-835
               
               
               Cow position:chr13:6759503-6759800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):28, 95

               
               
               Conread position:552-737
               
               
               Cow position:chr13:37497474-37497655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:552-853
               
               
               Cow position:chr13:37521453-37521760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):6, 17

               
               
               Conread position:554-676
               
               
               Cow position:chr13:23266012-23265887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:556-760
               
               
               Cow position:chr13:12605973-12606178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:556-835
               
               
               Cow position:chr13:18852353-18852075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 46

               
               
               Conread position:556-850
               
               
               Cow position:chr13:7076531-7076242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:556-851
               
               
               Cow position:chr13:16024863-16024575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):160, 17

               
               
               Conread position:557-768
               
               
               Cow position:chr13:13116373-13116159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):92, 86

               
               
               Conread position:557-789
               
               
               Cow position:chr13:17568406-17568645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:558-776
               
               
               Cow position:chr13:61047485-61047262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 89

               
               
               Conread position:560-810
               
               
               Cow position:chr13:33256773-33256522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):18, 187

               
               
               Conread position:563-789
               
               
               Cow position:chr13:24539766-24539536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:563-808
               
               
               Cow position:chr13:6079145-6079396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):14, 174

               
               
               Conread position:563-825
               
               
               Cow position:chr13:45726153-45725902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 59

               
               
               Conread position:563-855
               
               
               Cow position:chr13:57475150-57475436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:565-835
               
               
               Cow position:chr13:21287821-21288088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):237, 136

               
               
               Conread position:566-775
               
               
               Cow position:chr13:29122573-29122783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:566-783
               
               
               Cow position:chr13:58719256-58719468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):167, 14

               
               
               Conread position:567-825
               
               
               Cow position:chr13:18244125-18243869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):11, 124

               
               
               Conread position:569-693
               
               
               Cow position:chr13:57227972-57227849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:569-737
               
               
               Cow position:chr13:26983883-26983715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:569-738
               
               
               Cow position:chr13:29671175-29671343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:569-791
               
               
               Cow position:chr13:11954849-11955066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:569-822
               
               
               Cow position:chr13:1780099-1779836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:189
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:569-825
               
               
               Cow position:chr13:5658467-5658719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):163, 11

               
               
               Conread position:569-832
               
               
               Cow position:chr13:38012629-38012358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):12, 257

               
               
               Conread position:569-835
               
               
               Cow position:chr13:35660019-35659748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:569-850
               
               
               Cow position:chr13:19393550-19393278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:569-850
               
               
               Cow position:chr13:23856477-23856197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):110, 11

               
               
               Conread position:569-857
               
               
               Cow position:chr13:23166831-23167121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:212
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):12, 54

               
               
               Conread position:570-781
               
               
               Cow position:chr13:23960544-23960760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):74, 10

               
               
               Conread position:571-789
               
               
               Cow position:chr13:19023576-19023798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 168

               
               
               Conread position:571-833
               
               
               Cow position:chr13:17021457-17021730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):99, 172

               
               
               Conread position:571-843
               
               
               Cow position:chr13:52097886-52097612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):173, 245

               
               
               Conread position:572-791
               
               
               Cow position:chr13:38277875-38278092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):172, 133

               
               
               Conread position:572-791
               
               
               Cow position:chr13:55295364-55295580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):172, 47

               
               
               Conread position:572-805
               
               
               Cow position:chr13:20839830-20839589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 8

               
               
               Conread position:572-825
               
               
               Cow position:chr13:18166992-18166739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:193
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):172, 127

               
               
               Conread position:572-835
               
               
               Cow position:chr13:54702452-54702183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):122, 60

               
               
               Conread position:572-855
               
               
               Cow position:chr13:7257663-7257378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 192

               
               
               Conread position:572-862
               
               
               Cow position:chr13:60967026-60966735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):163, 107

               
               
               Conread position:573-734
               
               
               Cow position:chr13:46329203-46329367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:575-789
               
               
               Cow position:chr13:37985492-37985714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):115, 44

               
               
               Conread position:575-810
               
               
               Cow position:chr13:26261536-26261778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):107, 5

               
               
               Conread position:575-835
               
               
               Cow position:chr13:48037878-48037617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):210, 5

               
               
               Conread position:576-773
               
               
               Cow position:chr13:8195338-8195144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):172, 5

               
               
               Conread position:576-856
               
               
               Cow position:chr13:12614519-12614233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 237

               
               
               Conread position:577-789
               
               
               Cow position:chr13:26697845-26698061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:577-825
               
               
               Cow position:chr13:20530884-20531142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:578-744
               
               
               Cow position:chr13:14576922-14576761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:578-789
               
               
               Cow position:chr13:54381679-54381892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):154, 41

               
               
               Conread position:578-810
               
               
               Cow position:chr13:15041216-15041453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:578-853
               
               
               Cow position:chr13:57002995-57002710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 258

               
               
               Conread position:579-830
               
               
               Cow position:chr13:34995071-34995321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):123, 158

               
               
               Conread position:580-757
               
               
               Cow position:chr13:2113939-2113758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:580-778
               
               
               Cow position:chr13:11460875-11460681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:580-804
               
               
               Cow position:chr13:21210116-21209887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 19

               
               
               Conread position:580-805
               
               
               Cow position:chr13:46311782-46311998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):165, 50

               
               
               Conread position:580-825
               
               
               Cow position:chr13:61166203-61166444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:580-826
               
               
               Cow position:chr13:54095058-54094817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):219, 39

               
               
               Conread position:580-835
               
               
               Cow position:chr13:45022954-45023215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:581-850
               
               
               Cow position:chr13:20784841-20784577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):163, 153

               
               
               Conread position:582-735
               
               
               Cow position:chr13:10859710-10859863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 78

               
               
               Conread position:582-754
               
               
               Cow position:chr13:30693953-30693785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 108

               
               
               Conread position:582-789
               
               
               Cow position:chr13:19556004-19555803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):162, 135

               
               
               Conread position:582-790
               
               
               Cow position:chr13:53012133-53012340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 158

               
               
               Conread position:582-804
               
               
               Cow position:chr13:16343938-16343713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 62

               
               
               Conread position:582-806
               
               
               Cow position:chr13:48251740-48251961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):151, 106

               
               
               Conread position:582-806
               
               
               Cow position:chr13:52879664-52879437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 39

               
               
               Conread position:582-809
               
               
               Cow position:chr13:3315421-3315656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:582-810
               
               
               Cow position:chr13:11061236-11061005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 24

               
               
               Conread position:582-814
               
               
               Cow position:chr13:5713546-5713317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):208, 107

               
               
               Conread position:582-814
               
               
               Cow position:chr13:9246966-9246739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):164, 101

               
               
               Conread position:582-819
               
               
               Cow position:chr13:4664609-4664854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 168

               
               
               Conread position:582-823
               
               
               Cow position:chr13:43594864-43595102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):120, 38

               
               
               Conread position:582-825
               
               
               Cow position:chr13:22780197-22779968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):208, 37

               
               
               Conread position:582-826
               
               
               Cow position:chr13:21904911-21904669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):150, 27

               
               
               Conread position:582-832
               
               
               Cow position:chr13:14063276-14063521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):162, 39

               
               
               Conread position:582-845
               
               
               Cow position:chr13:29631104-29630840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):108, 45

               
               
               Conread position:582-850
               
               
               Cow position:chr13:23479281-23479017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:582-856
               
               
               Cow position:chr13:9107827-9107569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):225, 31

               
               
               Conread position:584-725
               
               
               Cow position:chr13:22732128-22732269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:584-785
               
               
               Cow position:chr13:16155468-16155674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):98, 35

               
               
               Conread position:584-809
               
               
               Cow position:chr13:40722460-40722689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 56

               
               
               Conread position:584-819
               
               
               Cow position:chr13:34299394-34299616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):161, 35

               
               
               Conread position:584-825
               
               
               Cow position:chr13:42200868-42200626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:184
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):119, 35

               
               
               Conread position:585-768
               
               
               Cow position:chr13:6969311-6969491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):164, 109

               
               
               Conread position:585-821
               
               
               Cow position:chr13:19364493-19364253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):159, 175

               
               
               Conread position:585-825
               
               
               Cow position:chr13:24715486-24715249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:586-729
               
               
               Cow position:chr13:60221186-60221331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:586-810
               
               
               Cow position:chr13:8201237-8201462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:586-826
               
               
               Cow position:chr13:13501374-13501613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 47

               
               
               Conread position:586-830
               
               
               Cow position:chr13:60487208-60487457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 237

               
               
               Conread position:586-850
               
               
               Cow position:chr13:15884766-15885035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:586-858
               
               
               Cow position:chr13:37069597-37069324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):157, 145

               
               
               Conread position:586-864
               
               
               Cow position:chr13:17970787-17971057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):158, 33

               
               
               Conread position:587-789
               
               
               Cow position:chr13:60599695-60599896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):146, 92

               
               
               Conread position:587-819
               
               
               Cow position:chr13:11096415-11096185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):145, 16

               
               
               Conread position:587-850
               
               
               Cow position:chr13:37521133-37521389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):158, 147

               
               
               Conread position:588-804
               
               
               Cow position:chr13:54345023-54344797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:588-849
               
               
               Cow position:chr13:54418478-54418211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):148, 229

               
               
               Conread position:589-774
               
               
               Cow position:chr13:21241847-21242032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 173

               
               
               Conread position:589-822
               
               
               Cow position:chr13:54331264-54331026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 149

               
               
               Conread position:590-810
               
               
               Cow position:chr13:24155784-24155562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:590-821
               
               
               Cow position:chr13:12283079-12282845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):88, 29

               
               
               Conread position:590-827
               
               
               Cow position:chr13:8524377-8524612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:590-850
               
               
               Cow position:chr13:22115947-22115680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:590-858
               
               
               Cow position:chr13:9587340-9587610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):100, 29

               
               
               Conread position:591-769
               
               
               Cow position:chr13:20705960-20706141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):99, 29

               
               
               Conread position:591-822
               
               
               Cow position:chr13:24776534-24776291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 155

               
               
               Conread position:591-835
               
               
               Cow position:chr13:55673962-55674210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):83, 218

               
               
               Conread position:591-891
               
               
               Cow position:chr13:24376733-24376440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):111, 121

               
               
               Conread position:592-821
               
               
               Cow position:chr13:15974852-15974621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):140, 97

               
               
               Conread position:592-826
               
               
               Cow position:chr13:8607277-8607515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 104

               
               
               Conread position:592-827
               
               
               Cow position:chr13:15622049-15621815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):129, 58

               
               
               Conread position:592-851
               
               
               Cow position:chr13:17114138-17114393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):152, 58

               
               
               Conread position:593-826
               
               
               Cow position:chr13:30510302-30510062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:593-851
               
               
               Cow position:chr13:2462991-2463249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):141, 6

               
               
               Conread position:594-777
               
               
               Cow position:chr13:50681569-50681753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):115, 110

               
               
               Conread position:594-821
               
               
               Cow position:chr13:2339669-2339444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):149, 25

               
               
               Conread position:594-827
               
               
               Cow position:chr13:20041717-20041964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:594-844
               
               
               Cow position:chr13:44323143-44322894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:186
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):26, 204

               
               
               Conread position:594-850
               
               
               Cow position:chr13:13176889-13176637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):150, 78

               
               
               Conread position:596-829
               
               
               Cow position:chr13:24586285-24586045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 144

               
               
               Conread position:596-835
               
               
               Cow position:chr13:6060770-6061010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:597-848
               
               
               Cow position:chr13:43184635-43184886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:598-789
               
               
               Cow position:chr13:17816007-17815813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):104, 139

               
               
               Conread position:598-789
               
               
               Cow position:chr13:22025466-22025664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:598-848
               
               
               Cow position:chr13:55315953-55316202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):146, 136

               
               
               Conread position:599-789
               
               
               Cow position:chr13:18551683-18551489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:600-802
               
               
               Cow position:chr13:20536733-20536531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:600-825
               
               
               Cow position:chr13:24369819-24369588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:600-832
               
               
               Cow position:chr13:30026347-30026114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:601-819
               
               
               Cow position:chr13:47963968-47964182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 60

               
               
               Conread position:602-821
               
               
               Cow position:chr13:54093972-54093753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):142, 87

               
               
               Conread position:603-825
               
               
               Cow position:chr13:9884999-9884774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):87, 131

               
               
               Conread position:604-814
               
               
               Cow position:chr13:12207273-12207061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):149, 130

               
               
               Conread position:607-810
               
               
               Cow position:chr13:19033774-19033575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:607-835
               
               
               Cow position:chr13:17439539-17439774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 131

               
               
               Conread position:607-835
               
               
               Cow position:chr13:43480288-43480054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 214

               
               
               Conread position:608-781
               
               
               Cow position:chr13:36877298-36877125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:609-768
               
               
               Cow position:chr13:33054170-33054330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 39

               
               
               Conread position:609-821
               
               
               Cow position:chr13:15192669-15192880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):135, 74

               
               
               Conread position:610-737
               
               
               Cow position:chr13:53308722-53308592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 126

               
               
               Conread position:610-754
               
               
               Cow position:chr13:43812307-43812157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 9

               
               
               Conread position:610-850
               
               
               Cow position:chr13:4464231-4463995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 138

               
               
               Conread position:610-850
               
               
               Cow position:chr13:37818536-37818767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):135, 23

               
               
               Conread position:611-831
               
               
               Cow position:chr13:6975567-6975789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):67, 91

               
               
               Conread position:611-833
               
               
               Cow position:chr13:52199312-52199085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):67, 126

               
               
               Conread position:611-850
               
               
               Cow position:chr13:12202587-12202350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:611-857
               
               
               Cow position:chr13:7059698-7059442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 211

               
               
               Conread position:612-813
               
               
               Cow position:chr13:43868896-43869095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 69

               
               
               Conread position:612-824
               
               
               Cow position:chr13:10845815-10845604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 82

               
               
               Conread position:613-782
               
               
               Cow position:chr13:5263065-5263234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 149

               
               
               Conread position:613-821
               
               
               Cow position:chr13:13465569-13465771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):131, 77

               
               
               Conread position:613-850
               
               
               Cow position:chr13:17745460-17745230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 121

               
               
               Conread position:614-824
               
               
               Cow position:chr13:9643662-9643879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 210

               
               
               Conread position:615-846
               
               
               Cow position:chr13:18172559-18172327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 121

               
               
               Conread position:615-857
               
               
               Cow position:chr13:17004373-17004613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):63, 51

               
               
               Conread position:620-797
               
               
               Cow position:chr13:51014966-51015153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:620-808
               
               
               Cow position:chr13:52227886-52228080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:622-857
               
               
               Cow position:chr13:60341026-60340786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):73, 192

               
               
               Conread position:628-850
               
               
               Cow position:chr13:15528822-15529047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 199

               
               
               Conread position:633-823
               
               
               Cow position:chr13:15195008-15195202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):101, 45

               
               
               Conread position:635-807
               
               
               Cow position:chr13:26369725-26369549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:635-814
               
               
               Cow position:chr13:52749289-52749461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):109, 15

               
               
               Conread position:635-820
               
               
               Cow position:chr13:15281737-15281929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):33, 46

               
               
               Conread position:635-832
               
               
               Cow position:chr13:9593706-9593510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:635-848
               
               
               Cow position:chr13:19022477-19022260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 100

               
               
               Conread position:635-850
               
               
               Cow position:chr13:37592739-37592959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 191

               
               
               Conread position:635-856
               
               
               Cow position:chr13:19223848-19223628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):70, 101

               
               
               Conread position:635-856
               
               
               Cow position:chr13:48598103-48597887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 55

               
               
               Conread position:637-853
               
               
               Cow position:chr13:8652240-8652458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:642-818
               
               
               Cow position:chr13:5079033-5079209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 15

               
               
               Conread position:643-823
               
               
               Cow position:chr13:15991031-15991224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:643-850
               
               
               Cow position:chr13:21283515-21283717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 95

               
               
               Conread position:645-857
               
               
               Cow position:chr13:14771650-14771432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):52, 173
Show alignments to all cow chromosomes.