Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 5-260 |
| Cow position: | chr10:20383703-20383947 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 85 |
| Conread position: | 6-161 |
| Cow position: | chr10:8328474-8328631 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 88 |
| Conread position: | 6-433 |
| Cow position: | chr10:4499546-4499103 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 169 |
| Conread position: | 6-440 |
| Cow position: | chr10:25498193-25497751 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 6-453 |
| Cow position: | chr10:46191212-46190767 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 233 |
| Conread position: | 6-708 |
| Cow position: | chr10:49310372-49309675 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 8-388 |
| Cow position: | chr10:32650568-32650181 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 50, 235 |
| Conread position: | 8-407 |
| Cow position: | chr10:58593754-58593340 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 125 |
| Conread position: | 9-381 |
| Cow position: | chr10:14859812-14859435 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 219 |
| Conread position: | 13-661 |
| Cow position: | chr10:15862467-15863099 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 73 |
| Conread position: | 13-708 |
| Cow position: | chr10:24299021-24299725 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 182 |
| Conread position: | 22-225 |
| Cow position: | chr10:280819-281023 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-244 |
| Cow position: | chr10:14803635-14803414 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 51-429 |
| Cow position: | chr10:2421993-2422375 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 54-381 |
| Cow position: | chr10:54967364-54967694 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 57-224 |
| Cow position: | chr10:38847139-38846978 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 47 |
| Conread position: | 57-327 |
| Cow position: | chr10:28116670-28116934 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 186, 55 |
| Conread position: | 57-400 |
| Cow position: | chr10:34318492-34318822 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 57-401 |
| Cow position: | chr10:42747868-42747535 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 57-519 |
| Cow position: | chr10:60489434-60488968 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 57-648 |
| Cow position: | chr10:14886079-14886660 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 59-382 |
| Cow position: | chr10:21382476-21382160 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 112, 101 |
| Conread position: | 63-307 |
| Cow position: | chr10:58377806-58378032 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 63-386 |
| Cow position: | chr10:183303-182987 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 281, 166 |
| Conread position: | 64-433 |
| Cow position: | chr10:21901431-21901782 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 115, 42 |
| Conread position: | 70-704 |
| Cow position: | chr10:14951469-14950834 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 346, 19 |
| Conread position: | 71-462 |
| Cow position: | chr10:32063903-32063513 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 88, 109 |
| Conread position: | 73-372 |
| Cow position: | chr10:19511356-19511070 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr10:1375285-1374981 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 136, 77 |
| Conread position: | 73-387 |
| Cow position: | chr10:10581422-10581097 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 73-387 |
| Cow position: | chr10:29846861-29847176 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 31 |
| Conread position: | 73-387 |
| Cow position: | chr10:37060679-37060371 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr10:38538741-38539049 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-402 |
| Cow position: | chr10:21486665-21486345 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 270, 130 |
| Conread position: | 73-414 |
| Cow position: | chr10:19143589-19143928 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 187, 157 |
| Conread position: | 73-416 |
| Cow position: | chr10:42736256-42735930 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 73-422 |
| Cow position: | chr10:7282934-7283276 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 106 |
| Conread position: | 74-387 |
| Cow position: | chr10:38345615-38345932 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 158, 189 |
| Conread position: | 75-401 |
| Cow position: | chr10:42109480-42109165 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 77-386 |
| Cow position: | chr10:39041560-39041863 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 183, 153 |
| Conread position: | 77-387 |
| Cow position: | chr10:8289715-8289410 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 102, 154 |
| Conread position: | 77-387 |
| Cow position: | chr10:62409107-62409410 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 266, 153 |
| Conread position: | 77-408 |
| Cow position: | chr10:37769567-37769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 266, 116 |
| Conread position: | 77-425 |
| Cow position: | chr10:37040832-37040493 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 259, 58 |
| Conread position: | 91-484 |
| Cow position: | chr10:41352025-41352425 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 153-408 |
| Cow position: | chr10:61296975-61296717 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 170-624 |
| Cow position: | chr10:28891776-28892216 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 58 |
| Conread position: | 294-701 |
| Cow position: | chr10:42663827-42663433 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 110, 14 |
Show alignments to all cow chromosomes.