Cow genome map

Conread name: Ss1.1-rcbl0_018774.5

Conread position: 7-225
Cow position: chr11:15983105-15982881 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 8-347
Cow position: chr11:44895543-44895869 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 228
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 59, 144

Conread position: 8-379
Cow position: chr11:8887676-8888054 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 115, 49

Conread position: 8-432
Cow position: chr11:59433712-59434129 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 271
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 162, 66

Conread position: 15-376
Cow position: chr11:7394582-7394216 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 256
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 69, 127

Conread position: 22-207
Cow position: chr11:67847128-67847314 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 11

Conread position: 22-225
Cow position: chr11:67449929-67449730 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 27-660
Cow position: chr11:81853154-81853777 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 6

Conread position: 28-526
Cow position: chr11:44507603-44507131 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 5

Conread position: 29-381
Cow position: chr11:9157977-9158327 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 239
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 11, 170

Conread position: 32-408
Cow position: chr11:77729096-77729466 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 245
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 41, 185

Conread position: 33-387
Cow position: chr11:10846873-10846532 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 171

Conread position: 33-388
Cow position: chr11:54209056-54208696 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 239
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 16, 25

Conread position: 34-423
Cow position: chr11:72005468-72005092 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 267
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 31, 83

Conread position: 36-387
Cow position: chr11:85394383-85394730 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 224
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 196

Conread position: 36-443
Cow position: chr11:17925141-17925532 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 272
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 18, 7

Conread position: 37-421
Cow position: chr11:7112883-7112492 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 260
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 7, 39

Conread position: 38-490
Cow position: chr11:21441048-21440606 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 299
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 11, 98

Conread position: 48-490
Cow position: chr11:87127257-87126839 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 303
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 14, 157

Conread position: 53-490
Cow position: chr11:72017634-72017199 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 17

Conread position: 54-399
Cow position: chr11:9220608-9220949 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 175, 139

Conread position: 54-557
Cow position: chr11:87171853-87171376 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 321
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 12, 121

Conread position: 54-658
Cow position: chr11:65162128-65162724 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 129

Conread position: 57-216
Cow position: chr11:29234238-29234393 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 129, 0

Conread position: 57-225
Cow position: chr11:9736542-9736710 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 57-226
Cow position: chr11:11126326-11126160 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 51, 13

Conread position: 57-372
Cow position: chr11:48084728-48084436 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 197, 69

Conread position: 57-408
Cow position: chr11:44496178-44496526 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 233
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 133, 170

Conread position: 57-434
Cow position: chr11:24242849-24242488 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 35

Conread position: 57-488
Cow position: chr11:42428739-42428323 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 118

Conread position: 57-658
Cow position: chr11:49076259-49076834 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 46

Conread position: 58-344
Cow position: chr11:24677458-24677187 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 193
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 178, 15

Conread position: 59-518
Cow position: chr11:7687315-7686849 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 128

Conread position: 61-489
Cow position: chr11:25180479-25180079 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 100

Conread position: 64-480
Cow position: chr11:2337401-2337003 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 260
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 97, 166

Conread position: 64-491
Cow position: chr11:28662232-28661814 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 290
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 144

Conread position: 65-645
Cow position: chr11:3237940-3237378 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 108

Conread position: 73-371
Cow position: chr11:53432382-53432674 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 195
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 270, 157

Conread position: 73-372
Cow position: chr11:11987506-11987213 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr11:12359035-12359340 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 270, 37

Conread position: 73-387
Cow position: chr11:23876691-23876383 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr11:29669242-29669546 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 270, 120

Conread position: 73-387
Cow position: chr11:38836030-38836338 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 187, 157

Conread position: 73-399
Cow position: chr11:37093675-37093995 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 217
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 270, 157

Conread position: 73-400
Cow position: chr11:12093148-12092822 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 153, 112

Conread position: 73-408
Cow position: chr11:8262307-8262641 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 224
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 163, 93

Conread position: 73-408
Cow position: chr11:26125541-26125876 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 231
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 187, 157

Conread position: 73-408
Cow position: chr11:58133745-58133411 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 219
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 270, 157

Conread position: 73-420
Cow position: chr11:4028163-4028499 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 227
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 98, 158

Conread position: 73-425
Cow position: chr11:19103099-19103447 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 270, 157

Conread position: 75-408
Cow position: chr11:52462481-52462128 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 236
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 109, 0

Conread position: 77-375
Cow position: chr11:76375085-76375377 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 124, 45

Conread position: 77-387
Cow position: chr11:28055211-28055504 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 201
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 153, 0

Conread position: 77-387
Cow position: chr11:72110576-72110880 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 203
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 266, 147

Conread position: 90-437
Cow position: chr11:64355580-64355243 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 232
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 182, 49

Conread position: 92-387
Cow position: chr11:8244072-8243784 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 251, 138

Conread position: 108-389
Cow position: chr11:75919921-75919634 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 128, 210

Conread position: 127-400
Cow position: chr11:56179249-56178987 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 10

Conread position: 135-498
Cow position: chr11:25182162-25181804 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 250
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 190, 13

Conread position: 155-566
Cow position: chr11:32682988-32682580 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 274
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 68, 41

Conread position: 218-515
Cow position: chr11:7306275-7306583 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 65

Conread position: 324-619
Cow position: chr11:7110732-7111029 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 24, 94

Conread position: 338-703
Cow position: chr11:11124595-11124217 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 266
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 75, 92

Show alignments to all cow chromosomes.