Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 5-385 |
| Cow position: | chr13:11764656-11765034 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 182, 70 |
| Conread position: | 6-388 |
| Cow position: | chr13:30657419-30657808 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 6-435 |
| Cow position: | chr13:34692704-34692282 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 88, 27 |
| Conread position: | 6-463 |
| Cow position: | chr13:33278821-33279266 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 219 |
| Conread position: | 7-387 |
| Cow position: | chr13:9044051-9043677 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 105 |
| Conread position: | 7-408 |
| Cow position: | chr13:62328041-62328446 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 99 |
| Conread position: | 8-408 |
| Cow position: | chr13:3276697-3276290 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 86, 69 |
| Conread position: | 8-431 |
| Cow position: | chr13:32738279-32738704 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 51, 233 |
| Conread position: | 8-661 |
| Cow position: | chr13:34767700-34768331 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 9-462 |
| Cow position: | chr13:15080645-15081098 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 17-344 |
| Cow position: | chr13:54284102-54283782 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 18-387 |
| Cow position: | chr13:15521005-15521377 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 22-225 |
| Cow position: | chr13:676470-676268 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr13:21840690-21840895 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr13:50108971-50108768 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 28-212 |
| Cow position: | chr13:34868268-34868085 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 181, 5 |
| Conread position: | 28-387 |
| Cow position: | chr13:15542964-15542611 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 28-387 |
| Cow position: | chr13:34187189-34187542 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 33-387 |
| Cow position: | chr13:30302567-30302218 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 40, 199 |
| Conread position: | 54-519 |
| Cow position: | chr13:48356806-48356343 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 57-305 |
| Cow position: | chr13:41607179-41606948 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 57-346 |
| Cow position: | chr13:60704052-60704324 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 208, 62 |
| Conread position: | 57-422 |
| Cow position: | chr13:46732875-46733220 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 163 |
| Conread position: | 64-656 |
| Cow position: | chr13:47859786-47859201 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 87 |
| Conread position: | 71-349 |
| Cow position: | chr13:30140448-30140173 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 182, 35 |
| Conread position: | 73-372 |
| Cow position: | chr13:3654853-3655147 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr13:1593702-1594010 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-387 |
| Cow position: | chr13:31612882-31613190 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr13:32544401-32544099 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-388 |
| Cow position: | chr13:6668671-6668998 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 141, 205 |
| Conread position: | 73-402 |
| Cow position: | chr13:35756684-35756365 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 73-416 |
| Cow position: | chr13:20542908-20543238 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 77-387 |
| Cow position: | chr13:4940535-4940231 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 184, 153 |
| Conread position: | 77-387 |
| Cow position: | chr13:15924934-15925238 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 266, 153 |
| Conread position: | 77-408 |
| Cow position: | chr13:34042916-34043242 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 266, 38 |
| Conread position: | 87-399 |
| Cow position: | chr13:33336884-33337186 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 107-408 |
| Cow position: | chr13:2305926-2305643 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 244-408 |
| Cow position: | chr13:34936150-34935982 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 260-708 |
| Cow position: | chr13:5283124-5282671 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 157, 15 |
Show alignments to all cow chromosomes.