Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 6-225 |
| Cow position: | chr14:14309646-14309881 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 6-408 |
| Cow position: | chr14:43034459-43034855 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 100, 60 |
| Conread position: | 9-408 |
| Cow position: | chr14:46464206-46463796 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 71, 104 |
| Conread position: | 17-416 |
| Cow position: | chr14:17684782-17684392 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 326, 16 |
| Conread position: | 18-443 |
| Cow position: | chr14:47589260-47588847 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 318, 25 |
| Conread position: | 22-225 |
| Cow position: | chr14:17492076-17492274 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 169, 11 |
| Conread position: | 28-382 |
| Cow position: | chr14:44225789-44225429 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 6 |
| Conread position: | 28-389 |
| Cow position: | chr14:44551430-44551066 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 250 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 28-408 |
| Cow position: | chr14:40339085-40338694 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 32-207 |
| Cow position: | chr14:44261721-44261895 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 11 |
| Conread position: | 33-633 |
| Cow position: | chr14:44580313-44579734 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 92 |
| Conread position: | 34-369 |
| Cow position: | chr14:50134282-50133943 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 48-218 |
| Cow position: | chr14:40170325-40170495 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 51-416 |
| Cow position: | chr14:45160214-45159835 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 54-226 |
| Cow position: | chr14:46669679-46669504 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 54-519 |
| Cow position: | chr14:43552769-43552311 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 307 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 99, 30 |
| Conread position: | 56-661 |
| Cow position: | chr14:11467945-11467377 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 549, 77 |
| Conread position: | 57-314 |
| Cow position: | chr14:46653931-46653684 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 108, 32 |
| Conread position: | 57-387 |
| Cow position: | chr14:16273952-16274276 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 57-401 |
| Cow position: | chr14:22018747-22018406 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 158, 270 |
| Conread position: | 57-401 |
| Cow position: | chr14:31607575-31607899 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 57-408 |
| Cow position: | chr14:36346221-36346560 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 264, 77 |
| Conread position: | 57-464 |
| Cow position: | chr14:44616639-44616250 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 47, 106 |
| Conread position: | 57-472 |
| Cow position: | chr14:41407207-41406786 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 57-626 |
| Cow position: | chr14:14422662-14423220 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 148 |
| Conread position: | 57-627 |
| Cow position: | chr14:14309719-14310261 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 376 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 93, 48 |
| Conread position: | 58-381 |
| Cow position: | chr14:35387790-35388110 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 171, 29 |
| Conread position: | 59-599 |
| Cow position: | chr14:44782908-44783448 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 39 |
| Conread position: | 59-624 |
| Cow position: | chr14:35928525-35927961 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 59-676 |
| Cow position: | chr14:44780568-44781193 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 39 |
| Conread position: | 70-540 |
| Cow position: | chr14:23260600-23261060 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 79 |
| Conread position: | 73-386 |
| Cow position: | chr14:20781788-20781481 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr14:5528396-5528088 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 73-387 |
| Cow position: | chr14:19328937-19329245 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr14:22032353-22032657 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 270, 153 |
| Conread position: | 73-387 |
| Cow position: | chr14:28994526-28994837 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 83, 158 |
| Conread position: | 73-387 |
| Cow position: | chr14:37223231-37222923 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr14:48254983-48255291 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-388 |
| Cow position: | chr14:11154824-11155133 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 267, 157 |
| Conread position: | 73-399 |
| Cow position: | chr14:13272592-13272263 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 160, 179 |
| Conread position: | 73-399 |
| Cow position: | chr14:44376767-44376436 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 73-399 |
| Cow position: | chr14:45833487-45833173 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 156, 95 |
| Conread position: | 73-408 |
| Cow position: | chr14:46083956-46083629 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 162, 31 |
| Conread position: | 73-411 |
| Cow position: | chr14:13302360-13302024 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 129, 160 |
| Conread position: | 77-388 |
| Cow position: | chr14:41755199-41754893 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 200, 35 |
| Conread position: | 116-399 |
| Cow position: | chr14:44675698-44675430 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 131-582 |
| Cow position: | chr14:47921292-47920865 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 269, 64 |
| Conread position: | 138-387 |
| Cow position: | chr14:17001783-17002027 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 173, 92 |
| Conread position: | 151-621 |
| Cow position: | chr14:25439225-25439698 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 297 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 50, 99 |
| Conread position: | 195-706 |
| Cow position: | chr14:49046067-49045552 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 240-660 |
| Cow position: | chr14:36184528-36184943 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 175, 24 |
Show alignments to all cow chromosomes.