Cow genome map

Conread name: Ss1.1-rcbl0_018774.5

Conread position: 1-408
Cow position: chr15:7894774-7895171 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 267
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 151, 65

Conread position: 1-478
Cow position: chr15:21448490-21448006 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 115

Conread position: 6-308
Cow position: chr15:49676447-49676138 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 55, 110

Conread position: 6-400
Cow position: chr15:35648795-35649193 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 55, 106

Conread position: 6-635
Cow position: chr15:1662803-1662173 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 103

Conread position: 7-408
Cow position: chr15:21960931-21960535 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 266
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 117, 59

Conread position: 9-624
Cow position: chr15:45886222-45885610 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 205

Conread position: 20-680
Cow position: chr15:324311-323668 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 21-385
Cow position: chr15:5955075-5955444 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 241
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 23

Conread position: 21-405
Cow position: chr15:53338442-53338055 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 253
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 205, 19

Conread position: 22-225
Cow position: chr15:50124553-50124756 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 11

Conread position: 27-624
Cow position: chr15:1236799-1236215 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 40

Conread position: 28-422
Cow position: chr15:4384651-4384259 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 255
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 5

Conread position: 28-424
Cow position: chr15:31358280-31357890 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 5

Conread position: 29-707
Cow position: chr15:21816360-21817038 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 87

Conread position: 36-408
Cow position: chr15:35754454-35754813 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 125

Conread position: 36-408
Cow position: chr15:42490574-42490203 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 241
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 34

Conread position: 36-420
Cow position: chr15:6554483-6554869 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 258
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 37, 196

Conread position: 38-362
Cow position: chr15:685530-685211 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 113

Conread position: 38-400
Cow position: chr15:24793424-24793072 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 241
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 11, 74

Conread position: 45-671
Cow position: chr15:15266426-15267050 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 107

Conread position: 49-399
Cow position: chr15:20080149-20080489 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 16, 62

Conread position: 51-226
Cow position: chr15:17787791-17787966 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 139

Conread position: 51-408
Cow position: chr15:327760-327411 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 230
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 181, 16

Conread position: 51-413
Cow position: chr15:490798-491173 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 256
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 109, 175

Conread position: 51-489
Cow position: chr15:32605478-32605898 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 57

Conread position: 53-439
Cow position: chr15:52635517-52635129 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 55

Conread position: 54-222
Cow position: chr15:3903115-3902941 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 93

Conread position: 54-399
Cow position: chr15:4649193-4648858 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 134

Conread position: 54-405
Cow position: chr15:35681306-35681643 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 245
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 12, 120

Conread position: 54-660
Cow position: chr15:40104801-40104204 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 50

Conread position: 57-615
Cow position: chr15:10479347-10479890 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 17

Conread position: 57-699
Cow position: chr15:4630567-4631217 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 47

Conread position: 58-283
Cow position: chr15:17682850-17683069 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 161
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 139, 58

Conread position: 58-529
Cow position: chr15:38957681-38958145 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 88

Conread position: 59-564
Cow position: chr15:11299365-11299845 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 38

Conread position: 61-432
Cow position: chr15:7541319-7540955 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 252
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 286, 132

Conread position: 61-484
Cow position: chr15:8407914-8407481 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 286
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 11, 50

Conread position: 64-388
Cow position: chr15:2006879-2006572 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 221
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 138, 98

Conread position: 64-661
Cow position: chr15:12614413-12613832 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 26

Conread position: 65-402
Cow position: chr15:7927969-7927641 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 282, 31

Conread position: 70-437
Cow position: chr15:17219532-17219871 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 248
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 258, 22

Conread position: 72-399
Cow position: chr15:36641965-36641643 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 32, 119

Conread position: 72-420
Cow position: chr15:7836573-7836238 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 229
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 38

Conread position: 73-295
Cow position: chr15:51800078-51799858 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 83, 126

Conread position: 73-372
Cow position: chr15:15347790-15348083 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 195
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr15:12421833-12422141 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr15:17039921-17040226 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 203
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 270, 72

Conread position: 73-387
Cow position: chr15:18576051-18575746 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 270, 120

Conread position: 73-387
Cow position: chr15:35734795-35734489 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 156, 102

Conread position: 73-388
Cow position: chr15:7933308-7933012 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 209
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 73-388
Cow position: chr15:10887941-10887614 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 211
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 144, 205

Conread position: 73-393
Cow position: chr15:2923845-2923524 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 179, 21

Conread position: 73-397
Cow position: chr15:51215924-51215605 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 214
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 136, 158

Conread position: 73-400
Cow position: chr15:6386963-6387291 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 156, 120

Conread position: 73-402
Cow position: chr15:44828145-44827816 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 208
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 197, 174

Conread position: 73-405
Cow position: chr15:6456620-6456294 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 153, 200

Conread position: 73-408
Cow position: chr15:370334-370680 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 69, 139

Conread position: 73-408
Cow position: chr15:8098816-8098476 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 227
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 229, 0

Conread position: 73-412
Cow position: chr15:14583268-14583615 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 232
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 144, 205

Conread position: 73-420
Cow position: chr15:21666689-21667029 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 221
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 263, 157

Conread position: 73-486
Cow position: chr15:36627273-36627685 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 139

Conread position: 74-387
Cow position: chr15:317000-317305 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 208
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 269, 156

Conread position: 74-387
Cow position: chr15:44069122-44068822 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 36

Conread position: 75-408
Cow position: chr15:32680216-32680562 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 231
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 67, 157

Conread position: 77-399
Cow position: chr15:37391834-37391517 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 213
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 263, 147

Conread position: 77-425
Cow position: chr15:32495059-32495400 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 235
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 26, 33

Conread position: 77-441
Cow position: chr15:1763416-1763048 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 246
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 167, 116

Conread position: 115-473
Cow position: chr15:10576696-10576362 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 113

Conread position: 116-442
Cow position: chr15:16506445-16506119 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 229
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 21, 5

Conread position: 172-413
Cow position: chr15:2201715-2201946 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 180, 56

Conread position: 238-673
Cow position: chr15:12364571-12364138 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 151

Conread position: 285-507
Cow position: chr15:51799609-51799385 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 17

Conread position: 311-661
Cow position: chr15:27064948-27065299 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 98

Conread position: 351-585
Cow position: chr15:684772-684541 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 67, 105

Show alignments to all cow chromosomes.