Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-379 |
| Cow position: | chr16:51083627-51083254 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 6-376 |
| Cow position: | chr16:54647399-54647032 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 6-387 |
| Cow position: | chr16:29046093-29045707 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 235 |
| Conread position: | 6-408 |
| Cow position: | chr16:19713775-19714180 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 6-513 |
| Cow position: | chr16:32935214-32934690 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 234 |
| Conread position: | 8-661 |
| Cow position: | chr16:14422785-14422132 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 134 |
| Conread position: | 22-225 |
| Cow position: | chr16:21185317-21185113 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 25-213 |
| Cow position: | chr16:5888539-5888346 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 25-386 |
| Cow position: | chr16:42051298-42051664 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 36, 171 |
| Conread position: | 28-225 |
| Cow position: | chr16:31592877-31593074 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 28-414 |
| Cow position: | chr16:12538895-12539277 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 29-400 |
| Cow position: | chr16:18688087-18688467 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 32-297 |
| Cow position: | chr16:45569115-45568860 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 41-401 |
| Cow position: | chr16:16029783-16029439 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 25, 132 |
| Conread position: | 43-224 |
| Cow position: | chr16:23670571-23670748 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 124, 58 |
| Conread position: | 47-602 |
| Cow position: | chr16:5589210-5588662 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 56 |
| Conread position: | 47-654 |
| Cow position: | chr16:334997-334412 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 49-372 |
| Cow position: | chr16:7676688-7677003 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 51-707 |
| Cow position: | chr16:9929561-9928933 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 431 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 298, 69 |
| Conread position: | 54-227 |
| Cow position: | chr16:25157214-25157382 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 160, 75 |
| Conread position: | 57-246 |
| Cow position: | chr16:31376227-31376413 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 180, 119 |
| Conread position: | 57-384 |
| Cow position: | chr16:12302431-12302778 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 57-397 |
| Cow position: | chr16:16687866-16687536 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 16 |
| Conread position: | 57-483 |
| Cow position: | chr16:55111844-55112268 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 117, 53 |
| Conread position: | 57-491 |
| Cow position: | chr16:40887262-40887676 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 290 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 57-624 |
| Cow position: | chr16:44965049-44964499 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 57-658 |
| Cow position: | chr16:5648239-5647649 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 28 |
| Conread position: | 57-658 |
| Cow position: | chr16:29982276-29981669 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 169 |
| Conread position: | 57-669 |
| Cow position: | chr16:36232598-36233204 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 33 |
| Conread position: | 64-413 |
| Cow position: | chr16:51685442-51685102 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 126, 165 |
| Conread position: | 64-462 |
| Cow position: | chr16:42186204-42186583 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 139, 26 |
| Conread position: | 73-387 |
| Cow position: | chr16:408048-408354 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr16:1568466-1568767 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 270, 37 |
| Conread position: | 73-387 |
| Cow position: | chr16:2484153-2484461 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 270, 153 |
| Conread position: | 73-387 |
| Cow position: | chr16:2728329-2728639 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 187, 158 |
| Conread position: | 73-387 |
| Cow position: | chr16:8817121-8817429 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr16:9777115-9776813 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr16:25440598-25440292 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 270, 131 |
| Conread position: | 73-387 |
| Cow position: | chr16:25458491-25458798 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 270, 131 |
| Conread position: | 73-388 |
| Cow position: | chr16:1430211-1429893 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 166, 151 |
| Conread position: | 73-398 |
| Cow position: | chr16:14666804-14667122 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-408 |
| Cow position: | chr16:10204431-10204764 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 74-484 |
| Cow position: | chr16:50875362-50875758 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 139, 30 |
| Conread position: | 76-408 |
| Cow position: | chr16:25084602-25084275 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 176, 40 |
| Conread position: | 77-386 |
| Cow position: | chr16:28472116-28472419 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 266, 153 |
| Conread position: | 77-387 |
| Cow position: | chr16:2412037-2412339 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 132, 52 |
| Conread position: | 77-387 |
| Cow position: | chr16:15183786-15183483 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 184, 129 |
| Conread position: | 77-387 |
| Cow position: | chr16:40297195-40297497 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 266, 149 |
| Conread position: | 77-423 |
| Cow position: | chr16:29031896-29031557 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 58 |
| Conread position: | 144-408 |
| Cow position: | chr16:49257679-49257943 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 150-706 |
| Cow position: | chr16:49955612-49956145 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 153-503 |
| Cow position: | chr16:44673912-44673559 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 187-661 |
| Cow position: | chr16:52816181-52816664 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 198, 234 |
| Conread position: | 189-647 |
| Cow position: | chr16:13650530-13650986 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 153, 38 |
| Conread position: | 194-658 |
| Cow position: | chr16:5888332-5887864 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 266-493 |
| Cow position: | chr16:25152635-25152418 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 370-658 |
| Cow position: | chr16:31717265-31717558 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 48, 78 |
Show alignments to all cow chromosomes.