Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-402 |
| Cow position: | chr17:4286749-4286350 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 107, 5 |
| Conread position: | 6-225 |
| Cow position: | chr17:4295027-4294805 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 75, 95 |
| Conread position: | 6-420 |
| Cow position: | chr17:14325844-14326253 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 128, 60 |
| Conread position: | 8-373 |
| Cow position: | chr17:32024548-32024906 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 8-433 |
| Cow position: | chr17:12670691-12671119 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 235 |
| Conread position: | 8-661 |
| Cow position: | chr17:42264174-42263553 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 75 |
| Conread position: | 17-658 |
| Cow position: | chr17:4081270-4080632 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 22-225 |
| Cow position: | chr17:2248969-2249171 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr17:8208722-8208518 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 22-225 |
| Cow position: | chr17:9653837-9654041 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 22-225 |
| Cow position: | chr17:11782983-11782779 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr17:24780660-24780460 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-409 |
| Cow position: | chr17:15157347-15157749 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 207, 11 |
| Conread position: | 27-700 |
| Cow position: | chr17:31200458-31201140 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 29-225 |
| Cow position: | chr17:2261727-2261525 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 32-609 |
| Cow position: | chr17:2146814-2146264 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 380 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 71 |
| Conread position: | 33-431 |
| Cow position: | chr17:13929270-13928892 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 310, 16 |
| Conread position: | 54-658 |
| Cow position: | chr17:152877-153477 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 57-400 |
| Cow position: | chr17:3710621-3710972 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 174, 261 |
| Conread position: | 58-623 |
| Cow position: | chr17:2587897-2587340 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 165 |
| Conread position: | 71-422 |
| Cow position: | chr17:6002451-6002783 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 73-387 |
| Cow position: | chr17:18104120-18104428 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 153 |
| Conread position: | 73-400 |
| Cow position: | chr17:4059667-4059346 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 141, 173 |
| Conread position: | 73-418 |
| Cow position: | chr17:20401234-20400911 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 73-423 |
| Cow position: | chr17:15370640-15370314 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 201, 61 |
| Conread position: | 74-624 |
| Cow position: | chr17:18302212-18302746 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 95 |
| Conread position: | 107-375 |
| Cow position: | chr17:1659324-1659583 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 150-518 |
| Cow position: | chr17:3694186-3694556 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 158-423 |
| Cow position: | chr17:20024496-20024238 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 187, 16 |
| Conread position: | 163-490 |
| Cow position: | chr17:15417327-15416999 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 242-624 |
| Cow position: | chr17:4294627-4294260 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 174, 28 |
Show alignments to all cow chromosomes.