Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-225 |
| Cow position: | chr2:59414369-59414600 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 2-387 |
| Cow position: | chr2:75251069-75250698 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 6-704 |
| Cow position: | chr2:3730038-3729349 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 109 |
| Conread position: | 8-399 |
| Cow position: | chr2:44935777-44936187 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 10-345 |
| Cow position: | chr2:74392085-74392418 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 11-399 |
| Cow position: | chr2:6879457-6879072 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 13-661 |
| Cow position: | chr2:85068956-85069612 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 118 |
| Conread position: | 17-225 |
| Cow position: | chr2:26865271-26865476 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 174, 16 |
| Conread position: | 20-387 |
| Cow position: | chr2:50983959-50984311 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 22-225 |
| Cow position: | chr2:52615738-52615534 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-404 |
| Cow position: | chr2:44992013-44992396 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 24-407 |
| Cow position: | chr2:11725107-11724734 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 26-225 |
| Cow position: | chr2:2380391-2380191 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 28-381 |
| Cow position: | chr2:56438458-56438803 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 28-387 |
| Cow position: | chr2:6877755-6877407 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 6 |
| Conread position: | 28-702 |
| Cow position: | chr2:32388828-32388153 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 38-464 |
| Cow position: | chr2:38589437-38589017 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 188 |
| Conread position: | 45-498 |
| Cow position: | chr2:43958877-43958432 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 21, 155 |
| Conread position: | 51-230 |
| Cow position: | chr2:29102449-29102274 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 53-404 |
| Cow position: | chr2:22077029-22076679 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 287, 140 |
| Conread position: | 54-490 |
| Cow position: | chr2:63293340-63293762 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 66 |
| Conread position: | 56-661 |
| Cow position: | chr2:42334035-42334624 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 57-359 |
| Cow position: | chr2:41146021-41145717 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 57-429 |
| Cow position: | chr2:28746726-28746384 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 358, 38 |
| Conread position: | 57-515 |
| Cow position: | chr2:782498-782952 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 106 |
| Conread position: | 57-532 |
| Cow position: | chr2:75676634-75677097 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 31 |
| Conread position: | 57-646 |
| Cow position: | chr2:20903892-20904462 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 116 |
| Conread position: | 57-661 |
| Cow position: | chr2:7210661-7210062 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 57-670 |
| Cow position: | chr2:73191071-73190481 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 97 |
| Conread position: | 57-708 |
| Cow position: | chr2:54649568-54650205 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 58-217 |
| Cow position: | chr2:769152-769315 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 58-401 |
| Cow position: | chr2:32458779-32459123 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 14, 150 |
| Conread position: | 58-404 |
| Cow position: | chr2:202414-202771 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 178 |
| Conread position: | 61-382 |
| Cow position: | chr2:41149285-41148972 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 129, 66 |
| Conread position: | 62-397 |
| Cow position: | chr2:52680660-52680327 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 283, 85 |
| Conread position: | 64-620 |
| Cow position: | chr2:46466273-46466804 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 10 |
| Conread position: | 69-334 |
| Cow position: | chr2:35352601-35352336 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 154, 121 |
| Conread position: | 71-443 |
| Cow position: | chr2:3749128-3748766 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 201, 38 |
| Conread position: | 72-334 |
| Cow position: | chr2:2357240-2357499 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 160, 97 |
| Conread position: | 73-371 |
| Cow position: | chr2:52061885-52061596 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 73-372 |
| Cow position: | chr2:45214041-45214334 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 204, 157 |
| Conread position: | 73-381 |
| Cow position: | chr2:10733614-10733914 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 156, 31 |
| Conread position: | 73-386 |
| Cow position: | chr2:13046463-13046770 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr2:976056-976358 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-387 |
| Cow position: | chr2:6959960-6959649 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 271, 43 |
| Conread position: | 73-387 |
| Cow position: | chr2:16899460-16899152 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 233, 157 |
| Conread position: | 73-387 |
| Cow position: | chr2:36979317-36979009 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 263, 157 |
| Conread position: | 73-387 |
| Cow position: | chr2:53328966-53328659 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr2:81256023-81255715 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-400 |
| Cow position: | chr2:1673432-1673751 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 156, 114 |
| Conread position: | 73-400 |
| Cow position: | chr2:47604579-47604908 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 266 |
| Conread position: | 73-404 |
| Cow position: | chr2:7901287-7900947 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 59, 93 |
| Conread position: | 73-404 |
| Cow position: | chr2:16288470-16288137 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 156, 121 |
| Conread position: | 73-408 |
| Cow position: | chr2:19009449-19009117 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 136, 117 |
| Conread position: | 73-408 |
| Cow position: | chr2:36031842-36032179 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 74-361 |
| Cow position: | chr2:34567468-34567762 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 74-429 |
| Cow position: | chr2:26655050-26655394 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 252 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 52, 147 |
| Conread position: | 77-387 |
| Cow position: | chr2:8117451-8117147 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 77-399 |
| Cow position: | chr2:78761698-78761383 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 152, 85 |
| Conread position: | 77-408 |
| Cow position: | chr2:24921557-24921229 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 266, 147 |
| Conread position: | 77-408 |
| Cow position: | chr2:28651014-28651343 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 131, 116 |
| Conread position: | 79-408 |
| Cow position: | chr2:32654562-32654227 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 150, 107 |
| Conread position: | 87-387 |
| Cow position: | chr2:10187022-10187315 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 256, 89 |
| Conread position: | 87-408 |
| Cow position: | chr2:14560378-14560053 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 157, 5 |
| Conread position: | 89-307 |
| Cow position: | chr2:30388439-30388237 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 112-624 |
| Cow position: | chr2:3439240-3438757 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 235, 22 |
| Conread position: | 116-399 |
| Cow position: | chr2:28792230-28791951 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 93, 88 |
| Conread position: | 130-443 |
| Cow position: | chr2:72109394-72109704 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 156, 90 |
| Conread position: | 130-508 |
| Cow position: | chr2:25244533-25244163 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 100 |
| Conread position: | 242-433 |
| Cow position: | chr2:50321372-50321169 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 306-582 |
| Cow position: | chr2:769367-769640 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 93, 74 |
| Conread position: | 331-624 |
| Cow position: | chr2:46209854-46210134 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 87 |
| Conread position: | 337-658 |
| Cow position: | chr2:74392548-74392871 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 353-708 |
| Cow position: | chr2:32434747-32435110 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 64, 10 |
Show alignments to all cow chromosomes.