Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 5-399 |
| Cow position: | chr20:4799826-4800205 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 140, 61 |
| Conread position: | 6-148 |
| Cow position: | chr20:9954152-9954301 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 8-387 |
| Cow position: | chr20:5575495-5575124 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 93 |
| Conread position: | 18-387 |
| Cow position: | chr20:23469875-23470239 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 20-418 |
| Cow position: | chr20:11276489-11276896 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 46, 88 |
| Conread position: | 22-387 |
| Cow position: | chr20:30684120-30683760 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 22-666 |
| Cow position: | chr20:22717885-22718521 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 62 |
| Conread position: | 28-408 |
| Cow position: | chr20:10102771-10103146 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 29-225 |
| Cow position: | chr20:822536-822335 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 48-484 |
| Cow position: | chr20:37579211-37578778 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 93, 124 |
| Conread position: | 56-658 |
| Cow position: | chr20:22206279-22205697 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 36 |
| Conread position: | 57-219 |
| Cow position: | chr20:31379126-31379285 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 57-226 |
| Cow position: | chr20:13435420-13435584 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 57-415 |
| Cow position: | chr20:2676865-2676525 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 201, 127 |
| Conread position: | 57-418 |
| Cow position: | chr20:8994071-8994413 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 58-515 |
| Cow position: | chr20:28593491-28593028 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 57 |
| Conread position: | 64-231 |
| Cow position: | chr20:20905443-20905610 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-624 |
| Cow position: | chr20:20755700-20756236 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 125, 33 |
| Conread position: | 73-224 |
| Cow position: | chr20:29947915-29947764 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-387 |
| Cow position: | chr20:8004784-8005091 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 270, 83 |
| Conread position: | 73-387 |
| Cow position: | chr20:23798612-23798298 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 189, 157 |
| Conread position: | 73-388 |
| Cow position: | chr20:27868926-27868618 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 270, 45 |
| Conread position: | 73-404 |
| Cow position: | chr20:15064494-15064151 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 128 |
| Conread position: | 73-408 |
| Cow position: | chr20:5534671-5534345 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-408 |
| Cow position: | chr20:21393302-21392975 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 128, 161 |
| Conread position: | 73-418 |
| Cow position: | chr20:13681355-13681690 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 156, 98 |
| Conread position: | 73-421 |
| Cow position: | chr20:7116741-7117087 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 74-399 |
| Cow position: | chr20:2791621-2791960 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 149, 116 |
| Conread position: | 77-387 |
| Cow position: | chr20:13762631-13762334 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 266, 113 |
| Conread position: | 77-387 |
| Cow position: | chr20:15291773-15291470 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 266, 153 |
| Conread position: | 77-417 |
| Cow position: | chr20:35118972-35118648 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 200, 15 |
| Conread position: | 90-459 |
| Cow position: | chr20:29572474-29572838 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 107-418 |
| Cow position: | chr20:13757957-13757656 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 83 |
| Conread position: | 118-388 |
| Cow position: | chr20:7086578-7086834 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 137-708 |
| Cow position: | chr20:9954582-9955168 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 391 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 193, 29 |
| Conread position: | 276-578 |
| Cow position: | chr20:35974320-35974615 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 435-654 |
| Cow position: | chr20:5575025-5574803 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 164, 10 |
Show alignments to all cow chromosomes.