Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-408 |
| Cow position: | chr21:2530182-2530591 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 59 |
| Conread position: | 1-408 |
| Cow position: | chr21:4222743-4223147 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 204 |
| Conread position: | 6-327 |
| Cow position: | chr21:21517140-21516818 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 159 |
| Conread position: | 6-399 |
| Cow position: | chr21:2769525-2769931 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 161 |
| Conread position: | 6-402 |
| Cow position: | chr21:445066-444661 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 37 |
| Conread position: | 6-408 |
| Cow position: | chr21:47939416-47939009 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 118, 60 |
| Conread position: | 15-408 |
| Cow position: | chr21:4076776-4076390 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 95, 51 |
| Conread position: | 20-582 |
| Cow position: | chr21:25992718-25993244 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 360 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 22-225 |
| Cow position: | chr21:2510555-2510353 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr21:12056097-12056301 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 22-225 |
| Cow position: | chr21:19610016-19609812 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 27-237 |
| Cow position: | chr21:4083545-4083342 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 29-225 |
| Cow position: | chr21:26638558-26638760 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 10, 87 |
| Conread position: | 29-388 |
| Cow position: | chr21:31559750-31560108 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 206 |
| Conread position: | 29-408 |
| Cow position: | chr21:2416144-2415749 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 86 |
| Conread position: | 38-695 |
| Cow position: | chr21:35089587-35088922 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 149 |
| Conread position: | 45-432 |
| Cow position: | chr21:216189-215806 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 48-222 |
| Cow position: | chr21:23860656-23860481 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 57-404 |
| Cow position: | chr21:7267670-7268014 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 57-650 |
| Cow position: | chr21:33755157-33754582 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 394 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 69, 55 |
| Conread position: | 57-677 |
| Cow position: | chr21:20744876-20745467 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 70-216 |
| Cow position: | chr21:34055063-34055208 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 73-363 |
| Cow position: | chr21:41953031-41952742 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 73-387 |
| Cow position: | chr21:1190890-1190583 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr21:2883886-2884196 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr21:10566527-10566219 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 106, 88 |
| Conread position: | 73-387 |
| Cow position: | chr21:40271965-40272271 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 31 |
| Conread position: | 73-399 |
| Cow position: | chr21:1292327-1292653 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 73-399 |
| Cow position: | chr21:10849928-10849608 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-408 |
| Cow position: | chr21:33251240-33250911 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 270, 154 |
| Conread position: | 73-515 |
| Cow position: | chr21:358865-358436 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 161, 24 |
| Conread position: | 75-408 |
| Cow position: | chr21:2542026-2542360 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 154, 86 |
| Conread position: | 83-457 |
| Cow position: | chr21:11052729-11053096 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 87-363 |
| Cow position: | chr21:2521611-2521336 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 76, 122 |
| Conread position: | 87-409 |
| Cow position: | chr21:4590125-4590451 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 142, 67 |
| Conread position: | 223-518 |
| Cow position: | chr21:18820396-18820690 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 14, 216 |
| Conread position: | 236-540 |
| Cow position: | chr21:36714106-36713813 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 166, 35 |
| Conread position: | 240-431 |
| Cow position: | chr21:25286299-25286109 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 96, 121 |
| Conread position: | 240-485 |
| Cow position: | chr21:46908397-46908641 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 240-528 |
| Cow position: | chr21:26616944-26617220 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 147, 94 |
Show alignments to all cow chromosomes.