Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 5-408 |
| Cow position: | chr22:871085-871486 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 272 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 57, 144 |
| Conread position: | 6-381 |
| Cow position: | chr22:37073403-37073784 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 191 |
| Conread position: | 6-396 |
| Cow position: | chr22:45880370-45880755 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 6-652 |
| Cow position: | chr22:309480-308847 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 418 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 43, 64 |
| Conread position: | 8-408 |
| Cow position: | chr22:36534201-36534609 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 14-359 |
| Cow position: | chr22:47640316-47639980 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 15-408 |
| Cow position: | chr22:39882417-39882812 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 20-285 |
| Cow position: | chr22:6503920-6504187 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 22-225 |
| Cow position: | chr22:3278626-3278826 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 22-225 |
| Cow position: | chr22:10910124-10910331 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr22:18476035-18476237 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr22:24949557-24949353 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr22:27310049-27310253 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 26-225 |
| Cow position: | chr22:5233577-5233773 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 7 |
| Conread position: | 29-284 |
| Cow position: | chr22:12732338-12732594 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 167 |
| Conread position: | 33-371 |
| Cow position: | chr22:44933697-44933363 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 199 |
| Conread position: | 33-382 |
| Cow position: | chr22:3307004-3307350 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 197, 16 |
| Conread position: | 33-425 |
| Cow position: | chr22:19143980-19144367 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 33-658 |
| Cow position: | chr22:7277240-7276617 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 165 |
| Conread position: | 34-408 |
| Cow position: | chr22:42990888-42990524 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 147 |
| Conread position: | 40-405 |
| Cow position: | chr22:32348255-32348599 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 51-387 |
| Cow position: | chr22:1293795-1294133 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 116, 22 |
| Conread position: | 51-440 |
| Cow position: | chr22:1285236-1285617 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 57-344 |
| Cow position: | chr22:44475005-44474728 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 57-408 |
| Cow position: | chr22:1321312-1320963 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 179, 30 |
| Conread position: | 64-484 |
| Cow position: | chr22:9273046-9272612 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 64-633 |
| Cow position: | chr22:1047068-1046526 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 30 |
| Conread position: | 67-673 |
| Cow position: | chr22:33350848-33350262 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 88 |
| Conread position: | 73-369 |
| Cow position: | chr22:13772470-13772168 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 127, 14 |
| Conread position: | 73-376 |
| Cow position: | chr22:36736449-36736159 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 274, 25 |
| Conread position: | 73-387 |
| Cow position: | chr22:17329064-17329369 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 270, 62 |
| Conread position: | 73-387 |
| Cow position: | chr22:27386711-27387023 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-387 |
| Cow position: | chr22:44456989-44456680 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 159 |
| Conread position: | 73-408 |
| Cow position: | chr22:39469842-39470173 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 82 |
| Conread position: | 73-411 |
| Cow position: | chr22:34168007-34167664 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 74-399 |
| Cow position: | chr22:15851016-15850680 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 155, 36 |
| Conread position: | 77-399 |
| Cow position: | chr22:36180817-36180490 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 115, 201 |
| Conread position: | 79-387 |
| Cow position: | chr22:21589002-21588706 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 264, 110 |
| Conread position: | 130-434 |
| Cow position: | chr22:21006168-21005862 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 181, 60 |
| Conread position: | 203-661 |
| Cow position: | chr22:36273062-36272600 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 254-475 |
| Cow position: | chr22:1624567-1624357 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.