Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-400 |
| Cow position: | chr24:12797903-12798317 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 5-519 |
| Cow position: | chr24:39678283-39677759 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 94 |
| Conread position: | 6-430 |
| Cow position: | chr24:17303746-17304170 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 152, 23 |
| Conread position: | 8-413 |
| Cow position: | chr24:15392455-15392883 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 8-704 |
| Cow position: | chr24:1447418-1446721 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 117 |
| Conread position: | 14-704 |
| Cow position: | chr24:35841771-35842451 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 105 |
| Conread position: | 22-225 |
| Cow position: | chr24:5993161-5993361 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 10 |
| Conread position: | 26-227 |
| Cow position: | chr24:35990846-35991040 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 28-397 |
| Cow position: | chr24:17314506-17314873 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 36-387 |
| Cow position: | chr24:14384811-14385156 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 38-375 |
| Cow position: | chr24:14390927-14391261 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 197, 38 |
| Conread position: | 38-413 |
| Cow position: | chr24:16649495-16649887 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 11, 148 |
| Conread position: | 39-209 |
| Cow position: | chr24:30117316-30117135 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 51-421 |
| Cow position: | chr24:6335476-6335107 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 181, 21 |
| Conread position: | 57-211 |
| Cow position: | chr24:36707639-36707484 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 57-333 |
| Cow position: | chr24:40654186-40653918 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 57-399 |
| Cow position: | chr24:29372534-29372883 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 57-427 |
| Cow position: | chr24:6351970-6351607 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 279, 167 |
| Conread position: | 57-464 |
| Cow position: | chr24:6057457-6057061 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 57-464 |
| Cow position: | chr24:32125719-32126110 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 35 |
| Conread position: | 57-582 |
| Cow position: | chr24:32331123-32330607 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 104 |
| Conread position: | 57-619 |
| Cow position: | chr24:38635525-38634971 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 263 |
| Conread position: | 57-702 |
| Cow position: | chr24:12288942-12289586 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 55 |
| Conread position: | 58-372 |
| Cow position: | chr24:36296951-36296625 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 95, 173 |
| Conread position: | 73-372 |
| Cow position: | chr24:4415770-4416057 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr24:29186567-29186258 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 270, 161 |
| Conread position: | 73-400 |
| Cow position: | chr24:6145121-6144800 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 267, 151 |
| Conread position: | 73-400 |
| Cow position: | chr24:12236823-12236492 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 154, 113 |
| Conread position: | 73-408 |
| Cow position: | chr24:19833145-19832814 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-408 |
| Cow position: | chr24:37216488-37216151 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 120 |
| Conread position: | 73-420 |
| Cow position: | chr24:148831-149169 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 270, 21 |
| Conread position: | 92-527 |
| Cow position: | chr24:14282852-14283265 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 145, 75 |
| Conread position: | 155-519 |
| Cow position: | chr24:33432747-33432400 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 201-529 |
| Cow position: | chr24:36707269-36706940 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 42, 28 |
Show alignments to all cow chromosomes.