Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 5-407 |
| Cow position: | chr28:18102116-18102496 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 126 |
| Conread position: | 6-387 |
| Cow position: | chr28:3192982-3193363 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 39, 230 |
| Conread position: | 6-408 |
| Cow position: | chr28:9953944-9953555 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 6-534 |
| Cow position: | chr28:22827862-22827328 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 108 |
| Conread position: | 7-368 |
| Cow position: | chr28:7001796-7001434 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 129 |
| Conread position: | 8-408 |
| Cow position: | chr28:15681700-15681305 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 144, 58 |
| Conread position: | 20-408 |
| Cow position: | chr28:21325584-21325175 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 274 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 74, 55 |
| Conread position: | 22-225 |
| Cow position: | chr28:489262-489058 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-400 |
| Cow position: | chr28:24667386-24667008 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 28-399 |
| Cow position: | chr28:7817021-7816643 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 169 |
| Conread position: | 28-416 |
| Cow position: | chr28:21358786-21358398 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 28-425 |
| Cow position: | chr28:1168398-1168788 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 28-425 |
| Cow position: | chr28:13459737-13459348 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 315, 5 |
| Conread position: | 33-371 |
| Cow position: | chr28:15378252-15378586 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 39, 199 |
| Conread position: | 33-372 |
| Cow position: | chr28:17388243-17387908 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 199 |
| Conread position: | 39-708 |
| Cow position: | chr28:26007785-26007132 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 114 |
| Conread position: | 48-407 |
| Cow position: | chr28:34324573-34324219 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 54-404 |
| Cow position: | chr28:5796566-5796212 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 54-408 |
| Cow position: | chr28:17311542-17311205 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 55 |
| Conread position: | 57-492 |
| Cow position: | chr28:18089268-18089696 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 26 |
| Conread position: | 57-496 |
| Cow position: | chr28:10464109-10464539 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 47 |
| Conread position: | 58-479 |
| Cow position: | chr28:34648670-34648270 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 64-488 |
| Cow position: | chr28:15585126-15584717 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 136, 173 |
| Conread position: | 65-413 |
| Cow position: | chr28:18181623-18181954 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 294, 9 |
| Conread position: | 73-387 |
| Cow position: | chr28:5752440-5752748 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-387 |
| Cow position: | chr28:10582265-10582569 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 187, 108 |
| Conread position: | 73-387 |
| Cow position: | chr28:12150042-12149741 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr28:17667792-17668100 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr28:29819290-29818985 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-399 |
| Cow position: | chr28:2083324-2083002 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-402 |
| Cow position: | chr28:782118-781794 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 97, 158 |
| Conread position: | 73-407 |
| Cow position: | chr28:1387670-1387999 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 154, 120 |
| Conread position: | 73-408 |
| Cow position: | chr28:5565581-5565249 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-408 |
| Cow position: | chr28:28973506-28973828 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 270, 88 |
| Conread position: | 73-408 |
| Cow position: | chr28:32792659-32792985 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 267, 157 |
| Conread position: | 73-413 |
| Cow position: | chr28:2990239-2990584 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 73-419 |
| Cow position: | chr28:18520741-18521083 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 231, 157 |
| Conread position: | 73-422 |
| Cow position: | chr28:22261431-22261769 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-425 |
| Cow position: | chr28:1504361-1504015 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 74-400 |
| Cow position: | chr28:10619377-10619709 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 74-493 |
| Cow position: | chr28:6657623-6658023 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 274, 45 |
| Conread position: | 77-387 |
| Cow position: | chr28:8378282-8377975 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 230, 153 |
| Conread position: | 77-387 |
| Cow position: | chr28:34593559-34593257 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 266, 153 |
| Conread position: | 77-388 |
| Cow position: | chr28:13522443-13522149 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 90-415 |
| Cow position: | chr28:8721741-8722079 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 162-489 |
| Cow position: | chr28:13721587-13721271 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 190-515 |
| Cow position: | chr28:25785509-25785203 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 39 |
Show alignments to all cow chromosomes.