Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 6-408 |
| Cow position: | chr29:27040985-27041390 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 97, 60 |
| Conread position: | 7-547 |
| Cow position: | chr29:30811309-30810781 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 223 |
| Conread position: | 8-334 |
| Cow position: | chr29:11841461-11841147 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 104 |
| Conread position: | 8-376 |
| Cow position: | chr29:11049057-11048680 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 112, 61 |
| Conread position: | 8-464 |
| Cow position: | chr29:104352-103883 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 232 |
| Conread position: | 8-708 |
| Cow position: | chr29:34751920-34752605 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 184 |
| Conread position: | 17-407 |
| Cow position: | chr29:24198848-24199242 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 17-425 |
| Cow position: | chr29:45459462-45459065 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 18-225 |
| Cow position: | chr29:32315782-32315576 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 20-372 |
| Cow position: | chr29:23975572-23975226 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 49-311 |
| Cow position: | chr29:4635252-4635502 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 49-487 |
| Cow position: | chr29:19906362-19905933 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 297, 78 |
| Conread position: | 54-432 |
| Cow position: | chr29:14073233-14073589 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 12, 105 |
| Conread position: | 57-341 |
| Cow position: | chr29:30108810-30108536 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 28 |
| Conread position: | 57-375 |
| Cow position: | chr29:15950474-15950783 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 130 |
| Conread position: | 57-526 |
| Cow position: | chr29:32890910-32890460 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 163 |
| Conread position: | 57-645 |
| Cow position: | chr29:803631-804196 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 17 |
| Conread position: | 70-325 |
| Cow position: | chr29:131283-131038 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 92, 147 |
| Conread position: | 70-371 |
| Cow position: | chr29:35263024-35262740 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 72-387 |
| Cow position: | chr29:2099531-2099224 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 271, 18 |
| Conread position: | 73-358 |
| Cow position: | chr29:8663963-8663681 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 163, 120 |
| Conread position: | 73-372 |
| Cow position: | chr29:48790-49083 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 276, 157 |
| Conread position: | 73-372 |
| Cow position: | chr29:32539497-32539204 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-372 |
| Cow position: | chr29:42650049-42649751 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 73-372 |
| Cow position: | chr29:42801909-42801611 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 73-387 |
| Cow position: | chr29:2841679-2841975 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 73-387 |
| Cow position: | chr29:6266806-6267115 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr29:7431530-7431838 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr29:10824271-10824578 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 252, 38 |
| Conread position: | 73-387 |
| Cow position: | chr29:19623558-19623866 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr29:25932858-25933166 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr29:26165136-26165440 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 73-387 |
| Cow position: | chr29:38226680-38226372 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 73-388 |
| Cow position: | chr29:21246254-21245950 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 270, 153 |
| Conread position: | 73-408 |
| Cow position: | chr29:40503293-40503625 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 267, 161 |
| Conread position: | 73-408 |
| Cow position: | chr29:43322245-43321905 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 73-425 |
| Cow position: | chr29:39080020-39080367 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 74-401 |
| Cow position: | chr29:2750698-2751019 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 113, 35 |
| Conread position: | 74-425 |
| Cow position: | chr29:19652793-19652448 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 269, 156 |
| Conread position: | 77-408 |
| Cow position: | chr29:21431659-21431996 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 49 |
| Conread position: | 112-497 |
| Cow position: | chr29:32640429-32640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 61 |
| Conread position: | 137-708 |
| Cow position: | chr29:45464149-45464730 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 187-528 |
| Cow position: | chr29:1714699-1714360 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 296-561 |
| Cow position: | chr29:6470973-6470710 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 49, 63 |
| Conread position: | 364-663 |
| Cow position: | chr29:131028-130726 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 222, 13 |
Show alignments to all cow chromosomes.