Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-408 |
| Cow position: | chr3:34396357-34396756 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 2-209 |
| Cow position: | chr3:36127087-36126871 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 34, 5 |
| Conread position: | 5-659 |
| Cow position: | chr3:15178005-15177341 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 11 |
| Conread position: | 6-408 |
| Cow position: | chr3:9716504-9716100 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 6-408 |
| Cow position: | chr3:14634406-14634811 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 85, 60 |
| Conread position: | 7-387 |
| Cow position: | chr3:5954495-5954872 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 178 |
| Conread position: | 7-661 |
| Cow position: | chr3:32842742-32843403 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 176 |
| Conread position: | 8-361 |
| Cow position: | chr3:4739225-4739562 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 8-624 |
| Cow position: | chr3:19692395-19693019 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 204 |
| Conread position: | 15-429 |
| Cow position: | chr3:49162411-49161998 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 26 |
| Conread position: | 17-225 |
| Cow position: | chr3:49614316-49614520 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 17-416 |
| Cow position: | chr3:37968745-37968324 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 18-211 |
| Cow position: | chr3:6782050-6781856 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 18-388 |
| Cow position: | chr3:83234410-83234793 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 76, 60 |
| Conread position: | 20-386 |
| Cow position: | chr3:75041484-75041849 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 46, 218 |
| Conread position: | 22-225 |
| Cow position: | chr3:3522670-3522466 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr3:46678257-46678461 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr3:64028427-64028631 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-233 |
| Cow position: | chr3:41212082-41212293 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-387 |
| Cow position: | chr3:23291749-23292108 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 22-387 |
| Cow position: | chr3:78027755-78028115 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 29-404 |
| Cow position: | chr3:63005488-63005882 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 11, 170 |
| Conread position: | 32-416 |
| Cow position: | chr3:24591963-24592341 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 194 |
| Conread position: | 36-431 |
| Cow position: | chr3:13277600-13277991 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 301, 18 |
| Conread position: | 38-707 |
| Cow position: | chr3:34093751-34094420 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 39-583 |
| Cow position: | chr3:58208450-58208974 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 124 |
| Conread position: | 42-404 |
| Cow position: | chr3:17951304-17950943 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 32, 148 |
| Conread position: | 51-414 |
| Cow position: | chr3:52865121-52865488 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 15 |
| Conread position: | 54-407 |
| Cow position: | chr3:49309050-49309382 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 54-490 |
| Cow position: | chr3:65583989-65584399 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 50 |
| Conread position: | 57-218 |
| Cow position: | chr3:45775448-45775608 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 57-226 |
| Cow position: | chr3:49140787-49140953 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 145, 113 |
| Conread position: | 57-433 |
| Cow position: | chr3:54783184-54782811 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 290, 31 |
| Conread position: | 57-459 |
| Cow position: | chr3:21945786-21946180 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 133 |
| Conread position: | 57-624 |
| Cow position: | chr3:18357256-18357807 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 112 |
| Conread position: | 57-626 |
| Cow position: | chr3:52861492-52860934 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 57-658 |
| Cow position: | chr3:36099088-36099688 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 156 |
| Conread position: | 57-661 |
| Cow position: | chr3:83700518-83701111 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 72 |
| Conread position: | 57-703 |
| Cow position: | chr3:14754870-14755525 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 58-584 |
| Cow position: | chr3:30929298-30928792 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 166 |
| Conread position: | 59-626 |
| Cow position: | chr3:80871353-80870801 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 103 |
| Conread position: | 64-400 |
| Cow position: | chr3:83295631-83295977 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 139, 105 |
| Conread position: | 73-224 |
| Cow position: | chr3:30314164-30314013 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-281 |
| Cow position: | chr3:48231370-48231567 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 73-360 |
| Cow position: | chr3:18464146-18464435 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 162, 110 |
| Conread position: | 73-372 |
| Cow position: | chr3:2711354-2711644 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 280, 151 |
| Conread position: | 73-386 |
| Cow position: | chr3:53515337-53515031 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-386 |
| Cow position: | chr3:69933001-69932698 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 270, 103 |
| Conread position: | 73-387 |
| Cow position: | chr3:5996263-5996574 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 156 |
| Conread position: | 73-387 |
| Cow position: | chr3:18811107-18810800 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 17 |
| Conread position: | 73-387 |
| Cow position: | chr3:34031293-34031600 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 270, 153 |
| Conread position: | 73-387 |
| Cow position: | chr3:36882308-36882613 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr3:43040088-43040390 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 73-387 |
| Cow position: | chr3:59860969-59860660 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 238, 157 |
| Conread position: | 73-387 |
| Cow position: | chr3:64017760-64018066 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-399 |
| Cow position: | chr3:38866012-38865691 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-399 |
| Cow position: | chr3:48061218-48061541 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-400 |
| Cow position: | chr3:19802028-19801703 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 150, 43 |
| Conread position: | 73-404 |
| Cow position: | chr3:47273362-47273684 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 251, 157 |
| Conread position: | 73-404 |
| Cow position: | chr3:49677366-49677027 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 73-408 |
| Cow position: | chr3:39326295-39325974 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 270, 114 |
| Conread position: | 73-421 |
| Cow position: | chr3:6685056-6684722 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 267, 113 |
| Conread position: | 73-422 |
| Cow position: | chr3:72629675-72629332 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 88 |
| Conread position: | 73-425 |
| Cow position: | chr3:10239256-10238910 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 37 |
| Conread position: | 73-488 |
| Cow position: | chr3:64358560-64358976 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 12 |
| Conread position: | 74-388 |
| Cow position: | chr3:3054215-3053918 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 61, 53 |
| Conread position: | 75-400 |
| Cow position: | chr3:2909477-2909800 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 161, 80 |
| Conread position: | 78-506 |
| Cow position: | chr3:50208967-50208549 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 106, 155 |
| Conread position: | 92-515 |
| Cow position: | chr3:3979977-3979570 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 293 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 143, 63 |
| Conread position: | 106-397 |
| Cow position: | chr3:42630569-42630287 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 229, 84 |
| Conread position: | 112-415 |
| Cow position: | chr3:19723019-19723302 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 231, 14 |
| Conread position: | 153-661 |
| Cow position: | chr3:54865182-54865688 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 162-529 |
| Cow position: | chr3:27905755-27906117 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 166-703 |
| Cow position: | chr3:14587827-14587313 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 168-515 |
| Cow position: | chr3:57500001-57500341 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 230 |
| Conread position: | 174-703 |
| Cow position: | chr3:26948849-26948298 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 282 |
| Conread position: | 185-535 |
| Cow position: | chr3:48329913-48329567 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 200-515 |
| Cow position: | chr3:50011889-50011584 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 145, 6 |
Show alignments to all cow chromosomes.