Cow genome map

Conread name: Ss1.1-rcbl0_018774.5

Conread position: 1-408
Cow position: chr3:34396357-34396756 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 265
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 72

Conread position: 2-209
Cow position: chr3:36127087-36126871 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 172
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 34, 5

Conread position: 5-659
Cow position: chr3:15178005-15177341 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 11

Conread position: 6-408
Cow position: chr3:9716504-9716100 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 255
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 86

Conread position: 6-408
Cow position: chr3:14634406-14634811 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 270
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 85, 60

Conread position: 7-387
Cow position: chr3:5954495-5954872 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 251
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 54, 178

Conread position: 7-661
Cow position: chr3:32842742-32843403 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 176

Conread position: 8-361
Cow position: chr3:4739225-4739562 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 40, 134

Conread position: 8-624
Cow position: chr3:19692395-19693019 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 204

Conread position: 15-429
Cow position: chr3:49162411-49161998 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 270
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 26

Conread position: 17-225
Cow position: chr3:49614316-49614520 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 17-416
Cow position: chr3:37968745-37968324 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 265
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 16

Conread position: 18-211
Cow position: chr3:6782050-6781856 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 31, 15

Conread position: 18-388
Cow position: chr3:83234410-83234793 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 76, 60

Conread position: 20-386
Cow position: chr3:75041484-75041849 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 46, 218

Conread position: 22-225
Cow position: chr3:3522670-3522466 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 27, 11

Conread position: 22-225
Cow position: chr3:46678257-46678461 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 27, 11

Conread position: 22-225
Cow position: chr3:64028427-64028631 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 11

Conread position: 22-233
Cow position: chr3:41212082-41212293 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 11

Conread position: 22-387
Cow position: chr3:23291749-23292108 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 234
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 51, 15

Conread position: 22-387
Cow position: chr3:78027755-78028115 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 242
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 51, 11

Conread position: 29-404
Cow position: chr3:63005488-63005882 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 268
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 11, 170

Conread position: 32-416
Cow position: chr3:24591963-24592341 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 194

Conread position: 36-431
Cow position: chr3:13277600-13277991 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 255
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 301, 18

Conread position: 38-707
Cow position: chr3:34093751-34094420 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 133

Conread position: 39-583
Cow position: chr3:58208450-58208974 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 124

Conread position: 42-404
Cow position: chr3:17951304-17950943 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 252
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 32, 148

Conread position: 51-414
Cow position: chr3:52865121-52865488 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 15

Conread position: 54-407
Cow position: chr3:49309050-49309382 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 55

Conread position: 54-490
Cow position: chr3:65583989-65584399 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 285
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 11, 50

Conread position: 57-218
Cow position: chr3:45775448-45775608 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 57, 0

Conread position: 57-226
Cow position: chr3:49140787-49140953 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 145, 113

Conread position: 57-433
Cow position: chr3:54783184-54782811 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 290, 31

Conread position: 57-459
Cow position: chr3:21945786-21946180 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 133

Conread position: 57-624
Cow position: chr3:18357256-18357807 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 112

Conread position: 57-626
Cow position: chr3:52861492-52860934 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 48

Conread position: 57-658
Cow position: chr3:36099088-36099688 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 156

Conread position: 57-661
Cow position: chr3:83700518-83701111 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 72

Conread position: 57-703
Cow position: chr3:14754870-14755525 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 51

Conread position: 58-584
Cow position: chr3:30929298-30928792 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 166

Conread position: 59-626
Cow position: chr3:80871353-80870801 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 103

Conread position: 64-400
Cow position: chr3:83295631-83295977 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 224
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 139, 105

Conread position: 73-224
Cow position: chr3:30314164-30314013 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 73-281
Cow position: chr3:48231370-48231567 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 73-360
Cow position: chr3:18464146-18464435 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 162, 110

Conread position: 73-372
Cow position: chr3:2711354-2711644 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 196
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 280, 151

Conread position: 73-386
Cow position: chr3:53515337-53515031 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 270, 157

Conread position: 73-386
Cow position: chr3:69933001-69932698 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 208
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 270, 103

Conread position: 73-387
Cow position: chr3:5996263-5996574 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 203
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 270, 156

Conread position: 73-387
Cow position: chr3:18811107-18810800 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 270, 17

Conread position: 73-387
Cow position: chr3:34031293-34031600 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 202
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 270, 153

Conread position: 73-387
Cow position: chr3:36882308-36882613 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr3:43040088-43040390 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 73-387
Cow position: chr3:59860969-59860660 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 205
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 238, 157

Conread position: 73-387
Cow position: chr3:64017760-64018066 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 204
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 270, 109

Conread position: 73-399
Cow position: chr3:38866012-38865691 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 214
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 270, 157

Conread position: 73-399
Cow position: chr3:48061218-48061541 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 270, 157

Conread position: 73-400
Cow position: chr3:19802028-19801703 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 150, 43

Conread position: 73-404
Cow position: chr3:47273362-47273684 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 251, 157

Conread position: 73-404
Cow position: chr3:49677366-49677027 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 220
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 156, 0

Conread position: 73-408
Cow position: chr3:39326295-39325974 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 270, 114

Conread position: 73-421
Cow position: chr3:6685056-6684722 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 236
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 267, 113

Conread position: 73-422
Cow position: chr3:72629675-72629332 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 227
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 270, 88

Conread position: 73-425
Cow position: chr3:10239256-10238910 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 238
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 30, 37

Conread position: 73-488
Cow position: chr3:64358560-64358976 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 12

Conread position: 74-388
Cow position: chr3:3054215-3053918 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 219
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 53

Conread position: 75-400
Cow position: chr3:2909477-2909800 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 161, 80

Conread position: 78-506
Cow position: chr3:50208967-50208549 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 293
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 106, 155

Conread position: 92-515
Cow position: chr3:3979977-3979570 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 293
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 143, 63

Conread position: 106-397
Cow position: chr3:42630569-42630287 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 229, 84

Conread position: 112-415
Cow position: chr3:19723019-19723302 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 231, 14

Conread position: 153-661
Cow position: chr3:54865182-54865688 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 77

Conread position: 162-529
Cow position: chr3:27905755-27906117 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 248
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 79, 31

Conread position: 166-703
Cow position: chr3:14587827-14587313 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 21

Conread position: 168-515
Cow position: chr3:57500001-57500341 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 60, 230

Conread position: 174-703
Cow position: chr3:26948849-26948298 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 282

Conread position: 185-535
Cow position: chr3:48329913-48329567 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 53, 36

Conread position: 200-515
Cow position: chr3:50011889-50011584 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 145, 6

Show alignments to all cow chromosomes.