Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 5-387 |
| Cow position: | chr5:52804927-52804552 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 5-599 |
| Cow position: | chr5:34167661-34167062 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 93 |
| Conread position: | 6-286 |
| Cow position: | chr5:26095317-26095044 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 6-302 |
| Cow position: | chr5:6519483-6519178 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 6-488 |
| Cow position: | chr5:52433396-52432934 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 330 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 156, 56 |
| Conread position: | 6-708 |
| Cow position: | chr5:27060510-27061198 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 42 |
| Conread position: | 7-332 |
| Cow position: | chr5:30088128-30088454 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 108 |
| Conread position: | 8-254 |
| Cow position: | chr5:29437390-29437634 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 8-515 |
| Cow position: | chr5:46630835-46631332 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 345 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 9-407 |
| Cow position: | chr5:51861477-51861881 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 16-660 |
| Cow position: | chr5:27488604-27487966 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 212 |
| Conread position: | 17-556 |
| Cow position: | chr5:23687910-23688458 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-285 |
| Cow position: | chr5:27683180-27683455 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 206 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 22-225 |
| Cow position: | chr5:18663802-18663598 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr5:23960553-23960757 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr5:27909713-27909917 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 28-388 |
| Cow position: | chr5:6158648-6158998 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 181, 5 |
| Conread position: | 28-408 |
| Cow position: | chr5:23716396-23716775 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 28-408 |
| Cow position: | chr5:41963383-41963756 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 31-708 |
| Cow position: | chr5:58747435-58746773 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 18 |
| Conread position: | 32-387 |
| Cow position: | chr5:57483001-57483346 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 41, 152 |
| Conread position: | 33-387 |
| Cow position: | chr5:3504702-3505045 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 310, 39 |
| Conread position: | 33-397 |
| Cow position: | chr5:76124006-76124361 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 57 |
| Conread position: | 33-413 |
| Cow position: | chr5:49101184-49100815 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 33-508 |
| Cow position: | chr5:27000743-27000279 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 18 |
| Conread position: | 40-388 |
| Cow position: | chr5:25001382-25001716 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 51-366 |
| Cow position: | chr5:54619997-54619702 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 53-397 |
| Cow position: | chr5:14659563-14659913 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 50 |
| Conread position: | 54-399 |
| Cow position: | chr5:56858180-56858519 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 173 |
| Conread position: | 54-541 |
| Cow position: | chr5:58090304-58090753 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 56-623 |
| Cow position: | chr5:23227780-23227230 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 121 |
| Conread position: | 57-404 |
| Cow position: | chr5:12681983-12682326 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 179, 17 |
| Conread position: | 58-429 |
| Cow position: | chr5:7369746-7370106 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 59-408 |
| Cow position: | chr5:46659227-46658875 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 173, 118 |
| Conread position: | 61-656 |
| Cow position: | chr5:24151594-24151001 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 38 |
| Conread position: | 65-428 |
| Cow position: | chr5:51162427-51162055 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 204, 82 |
| Conread position: | 70-307 |
| Cow position: | chr5:60900215-60899979 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 70-384 |
| Cow position: | chr5:49128762-49128456 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 134, 24 |
| Conread position: | 73-371 |
| Cow position: | chr5:64782514-64782802 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 73-387 |
| Cow position: | chr5:416216-416525 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 83, 159 |
| Conread position: | 73-387 |
| Cow position: | chr5:1342293-1342600 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 73-387 |
| Cow position: | chr5:2430629-2430936 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr5:3785314-3785010 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 73-387 |
| Cow position: | chr5:4068493-4068189 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 73-387 |
| Cow position: | chr5:7273369-7273066 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 73-387 |
| Cow position: | chr5:34696087-34695781 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 270, 130 |
| Conread position: | 73-387 |
| Cow position: | chr5:54793115-54793419 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 73-387 |
| Cow position: | chr5:55627507-55627201 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 136, 120 |
| Conread position: | 73-387 |
| Cow position: | chr5:59282265-59281957 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-399 |
| Cow position: | chr5:4384732-4384410 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 175, 48 |
| Conread position: | 73-400 |
| Cow position: | chr5:41530067-41530392 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 156, 99 |
| Conread position: | 73-418 |
| Cow position: | chr5:61273658-61274006 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 6, 114 |
| Conread position: | 73-431 |
| Cow position: | chr5:37731848-37731496 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 74-408 |
| Cow position: | chr5:2913952-2913622 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 269, 139 |
| Conread position: | 77-381 |
| Cow position: | chr5:32674229-32674540 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 152, 116 |
| Conread position: | 77-387 |
| Cow position: | chr5:29457121-29456817 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 81, 44 |
| Conread position: | 77-387 |
| Cow position: | chr5:49119779-49120082 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 266, 149 |
| Conread position: | 87-408 |
| Cow position: | chr5:28006718-28006404 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 107, 36 |
| Conread position: | 90-478 |
| Cow position: | chr5:7502900-7503279 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 19 |
| Conread position: | 107-433 |
| Cow position: | chr5:14346895-14347216 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 236, 41 |
| Conread position: | 112-540 |
| Cow position: | chr5:26070379-26070782 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 116 |
| Conread position: | 116-442 |
| Cow position: | chr5:29123568-29123892 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 153, 82 |
| Conread position: | 132-658 |
| Cow position: | chr5:26090406-26090927 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 242-486 |
| Cow position: | chr5:51319910-51320156 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 9, 68 |
| Conread position: | 340-520 |
| Cow position: | chr5:6519098-6518920 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 378-679 |
| Cow position: | chr5:27683509-27683817 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 166 |
| Conread position: | 413-677 |
| Cow position: | chr5:76124688-76124951 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 122, 33 |
Show alignments to all cow chromosomes.