Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-269 |
| Cow position: | chr6:42359941-42360204 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 5-680 |
| Cow position: | chr6:34203249-34202604 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 443 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 140, 77 |
| Conread position: | 8-224 |
| Cow position: | chr6:2885955-2885740 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 8-225 |
| Cow position: | chr6:59741317-59741526 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 172 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 8-429 |
| Cow position: | chr6:10054346-10053936 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 197 |
| Conread position: | 9-345 |
| Cow position: | chr6:16672117-16671768 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 182 |
| Conread position: | 14-307 |
| Cow position: | chr6:48368137-48367855 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 71, 151 |
| Conread position: | 19-387 |
| Cow position: | chr6:62829204-62829560 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 20-370 |
| Cow position: | chr6:28274687-28274346 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 12 |
| Conread position: | 22-225 |
| Cow position: | chr6:27169273-27169069 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 22-225 |
| Cow position: | chr6:28491817-28492019 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr6:43617413-43617208 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 22-225 |
| Cow position: | chr6:68026479-68026274 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 22-387 |
| Cow position: | chr6:15280846-15281206 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-387 |
| Cow position: | chr6:34893313-34893670 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 28-408 |
| Cow position: | chr6:11278005-11278377 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 31-519 |
| Cow position: | chr6:7179979-7180454 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 17 |
| Conread position: | 32-366 |
| Cow position: | chr6:13317999-13318327 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 32-404 |
| Cow position: | chr6:38231963-38231585 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 206, 40 |
| Conread position: | 33-333 |
| Cow position: | chr6:52736088-52735789 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 200, 37 |
| Conread position: | 33-386 |
| Cow position: | chr6:21971360-21971015 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 33-387 |
| Cow position: | chr6:65841276-65840925 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 33-388 |
| Cow position: | chr6:35877030-35877380 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 35-582 |
| Cow position: | chr6:66539009-66538475 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 38-394 |
| Cow position: | chr6:28509315-28508963 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 40-225 |
| Cow position: | chr6:1384160-1384349 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 64 |
| Conread position: | 47-492 |
| Cow position: | chr6:65900238-65900681 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 18, 89 |
| Conread position: | 49-400 |
| Cow position: | chr6:12093185-12093531 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 53-700 |
| Cow position: | chr6:37477907-37477248 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 83 |
| Conread position: | 54-584 |
| Cow position: | chr6:52804088-52803586 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 292, 114 |
| Conread position: | 57-341 |
| Cow position: | chr6:17100242-17100517 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 57-482 |
| Cow position: | chr6:25357336-25356914 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 262, 141 |
| Conread position: | 58-386 |
| Cow position: | chr6:40554956-40555272 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 285, 13 |
| Conread position: | 60-623 |
| Cow position: | chr6:66194317-66194868 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 154 |
| Conread position: | 63-413 |
| Cow position: | chr6:39161865-39161529 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 241, 5 |
| Conread position: | 70-286 |
| Cow position: | chr6:51190195-51189989 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 128, 63 |
| Conread position: | 70-385 |
| Cow position: | chr6:62489063-62489378 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 165, 83 |
| Conread position: | 71-407 |
| Cow position: | chr6:6619759-6620073 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 72-387 |
| Cow position: | chr6:21686541-21686239 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 271, 77 |
| Conread position: | 73-371 |
| Cow position: | chr6:6476808-6477106 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 156, 56 |
| Conread position: | 73-387 |
| Cow position: | chr6:51872-52175 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr6:5951591-5951898 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 270, 96 |
| Conread position: | 73-387 |
| Cow position: | chr6:8201377-8201069 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr6:15141530-15141833 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 270, 103 |
| Conread position: | 73-387 |
| Cow position: | chr6:24238692-24238388 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 73-387 |
| Cow position: | chr6:36525687-36525382 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 270, 56 |
| Conread position: | 73-387 |
| Cow position: | chr6:39437288-39436975 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 179, 157 |
| Conread position: | 73-387 |
| Cow position: | chr6:50497808-50498112 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 270, 37 |
| Conread position: | 73-387 |
| Cow position: | chr6:55544682-55544990 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 73-387 |
| Cow position: | chr6:64713193-64712891 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 225, 45 |
| Conread position: | 73-387 |
| Cow position: | chr6:64714760-64714458 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 225, 45 |
| Conread position: | 73-388 |
| Cow position: | chr6:1823601-1823903 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-399 |
| Cow position: | chr6:30478744-30478410 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 73-408 |
| Cow position: | chr6:3488747-3489079 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-422 |
| Cow position: | chr6:3278306-3278652 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 270, 51 |
| Conread position: | 73-425 |
| Cow position: | chr6:3889842-3890187 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 74-408 |
| Cow position: | chr6:65880510-65880173 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 82, 162 |
| Conread position: | 77-387 |
| Cow position: | chr6:2111316-2111616 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 266, 116 |
| Conread position: | 77-387 |
| Cow position: | chr6:27530358-27530658 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 87-661 |
| Cow position: | chr6:51584366-51584932 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 374 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 116-520 |
| Cow position: | chr6:4904449-4904848 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 120, 29 |
| Conread position: | 120-402 |
| Cow position: | chr6:20496111-20495840 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 249-658 |
| Cow position: | chr6:59741756-59742158 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 107, 59 |
| Conread position: | 277-484 |
| Cow position: | chr6:49946619-49946831 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 364-658 |
| Cow position: | chr6:42360216-42360509 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 128, 43 |
Show alignments to all cow chromosomes.