Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 2-422 |
| Cow position: | chr7:20106724-20107149 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 5-408 |
| Cow position: | chr7:67416868-67416477 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 130, 62 |
| Conread position: | 6-387 |
| Cow position: | chr7:33406420-33406775 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 6-387 |
| Cow position: | chr7:38536347-38535977 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 169, 72 |
| Conread position: | 6-443 |
| Cow position: | chr7:55280975-55281421 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 136 |
| Conread position: | 7-305 |
| Cow position: | chr7:39108894-39109206 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 188 |
| Conread position: | 8-387 |
| Cow position: | chr7:446812-447193 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 9-436 |
| Cow position: | chr7:29370943-29371374 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 51, 194 |
| Conread position: | 16-371 |
| Cow position: | chr7:63020645-63020299 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 17-400 |
| Cow position: | chr7:53990556-53990172 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 21-413 |
| Cow position: | chr7:68084613-68084226 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 41, 177 |
| Conread position: | 22-225 |
| Cow position: | chr7:6643086-6643290 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr7:6648868-6649071 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 22-341 |
| Cow position: | chr7:55538130-55538440 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 22-386 |
| Cow position: | chr7:48633192-48632832 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 22-408 |
| Cow position: | chr7:51013771-51013377 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 180 |
| Conread position: | 25-508 |
| Cow position: | chr7:26883932-26883448 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 72 |
| Conread position: | 28-199 |
| Cow position: | chr7:26890587-26890416 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 28-408 |
| Cow position: | chr7:3154562-3154184 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 32-625 |
| Cow position: | chr7:49290374-49289772 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 59 |
| Conread position: | 32-704 |
| Cow position: | chr7:47050198-47049541 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 25 |
| Conread position: | 38-183 |
| Cow position: | chr7:62679887-62680031 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 43-387 |
| Cow position: | chr7:67426148-67425808 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 201, 23 |
| Conread position: | 43-481 |
| Cow position: | chr7:750690-750270 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 292, 14 |
| Conread position: | 45-226 |
| Cow position: | chr7:58378432-58378607 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 56-401 |
| Cow position: | chr7:25099913-25099576 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 16 |
| Conread position: | 57-224 |
| Cow position: | chr7:54867740-54867897 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 57-306 |
| Cow position: | chr7:1736428-1736665 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 57-397 |
| Cow position: | chr7:53015246-53014910 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 71 |
| Conread position: | 57-413 |
| Cow position: | chr7:18935797-18936156 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 57-707 |
| Cow position: | chr7:20429251-20429904 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 167 |
| Conread position: | 57-708 |
| Cow position: | chr7:60857598-60858255 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 51 |
| Conread position: | 64-623 |
| Cow position: | chr7:31864599-31864074 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 73-215 |
| Cow position: | chr7:35287823-35287970 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 73-366 |
| Cow position: | chr7:8145503-8145790 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 73-381 |
| Cow position: | chr7:27144076-27143768 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 31, 41 |
| Conread position: | 73-387 |
| Cow position: | chr7:1372915-1373222 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 140 |
| Conread position: | 73-387 |
| Cow position: | chr7:13537993-13538301 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr7:21127916-21128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr7:21235276-21235584 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr7:38396961-38396652 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr7:54602584-54602276 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr7:64242202-64242509 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-399 |
| Cow position: | chr7:27786366-27786045 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 270, 140 |
| Conread position: | 73-399 |
| Cow position: | chr7:30156554-30156886 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 73-408 |
| Cow position: | chr7:21985134-21984801 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-408 |
| Cow position: | chr7:34148844-34148513 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 25 |
| Conread position: | 73-408 |
| Cow position: | chr7:68779123-68779453 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 187, 116 |
| Conread position: | 77-306 |
| Cow position: | chr7:29469596-29469372 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 65, 99 |
| Conread position: | 77-379 |
| Cow position: | chr7:1449225-1448926 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 264, 109 |
| Conread position: | 80-443 |
| Cow position: | chr7:67653673-67653321 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 179, 104 |
| Conread position: | 87-411 |
| Cow position: | chr7:1611682-1612002 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 253, 135 |
| Conread position: | 90-436 |
| Cow position: | chr7:21242382-21242722 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 112-399 |
| Cow position: | chr7:1405756-1406023 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 229, 83 |
| Conread position: | 112-400 |
| Cow position: | chr7:3729762-3729483 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 224, 49 |
| Conread position: | 132-369 |
| Cow position: | chr7:64395181-64394955 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 105, 9 |
| Conread position: | 143-488 |
| Cow position: | chr7:37021323-37020991 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 196, 84 |
| Conread position: | 204-397 |
| Cow position: | chr7:26457513-26457710 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 219-408 |
| Cow position: | chr7:35288024-35288216 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 225-515 |
| Cow position: | chr7:49445892-49445601 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 18, 112 |
| Conread position: | 230-661 |
| Cow position: | chr7:39556637-39557078 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 242-658 |
| Cow position: | chr7:22680431-22680848 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 66 |
| Conread position: | 244-669 |
| Cow position: | chr7:63961132-63961549 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 173, 201 |
| Conread position: | 323-579 |
| Cow position: | chr7:25250068-25249815 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 127 |
| Conread position: | 330-670 |
| Cow position: | chr7:1737064-1737404 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 116 |
Show alignments to all cow chromosomes.