Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 1-408 |
| Cow position: | chr8:47670472-47670072 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 6-509 |
| Cow position: | chr8:8904503-8905000 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 128 |
| Conread position: | 6-527 |
| Cow position: | chr8:44693306-44692799 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 359 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 191 |
| Conread position: | 17-379 |
| Cow position: | chr8:8595915-8596271 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 18-408 |
| Cow position: | chr8:47885004-47884604 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 20-387 |
| Cow position: | chr8:25407445-25407075 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 167 |
| Conread position: | 20-400 |
| Cow position: | chr8:44077042-44077417 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 20-516 |
| Cow position: | chr8:53427325-53426814 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 12 |
| Conread position: | 22-225 |
| Cow position: | chr8:9735222-9735020 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chr8:32439467-32439671 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-387 |
| Cow position: | chr8:47662352-47662708 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-404 |
| Cow position: | chr8:11801209-11800830 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 28-387 |
| Cow position: | chr8:4686363-4686010 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 5 |
| Conread position: | 28-388 |
| Cow position: | chr8:24420820-24421168 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 5 |
| Conread position: | 29-223 |
| Cow position: | chr8:11831719-11831524 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 161 |
| Conread position: | 29-484 |
| Cow position: | chr8:11055855-11055413 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 33-399 |
| Cow position: | chr8:45795780-45796143 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 33-415 |
| Cow position: | chr8:25776911-25777290 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 33-426 |
| Cow position: | chr8:11757690-11757286 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 7, 391 |
| Conread position: | 38-286 |
| Cow position: | chr8:5873598-5873350 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 65 |
| Conread position: | 38-422 |
| Cow position: | chr8:42658501-42658876 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 52-422 |
| Cow position: | chr8:46633448-46633815 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 147, 20 |
| Conread position: | 56-408 |
| Cow position: | chr8:27983860-27984219 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 57-708 |
| Cow position: | chr8:42467337-42466687 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 46 |
| Conread position: | 58-484 |
| Cow position: | chr8:25542535-25542128 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 51 |
| Conread position: | 61-408 |
| Cow position: | chr8:19229743-19229394 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 168, 132 |
| Conread position: | 71-382 |
| Cow position: | chr8:48370958-48370651 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 79, 143 |
| Conread position: | 71-582 |
| Cow position: | chr8:12664096-12664604 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 160 |
| Conread position: | 73-334 |
| Cow position: | chr8:36636620-36636872 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 73-341 |
| Cow position: | chr8:61198193-61198452 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 158 |
| Conread position: | 73-371 |
| Cow position: | chr8:8402277-8402569 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-383 |
| Cow position: | chr8:36637735-36638040 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr8:3857090-3857398 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr8:19328877-19328570 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 267, 157 |
| Conread position: | 73-387 |
| Cow position: | chr8:25522320-25522014 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr8:29440905-29441210 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr8:32319625-32319933 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr8:33588300-33587993 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chr8:38088047-38087740 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 270, 109 |
| Conread position: | 73-387 |
| Cow position: | chr8:60060126-60059819 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-388 |
| Cow position: | chr8:8229862-8230188 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 141, 205 |
| Conread position: | 73-388 |
| Cow position: | chr8:8316707-8317012 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 276, 120 |
| Conread position: | 73-400 |
| Cow position: | chr8:9540566-9540900 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 88, 315 |
| Conread position: | 73-400 |
| Cow position: | chr8:11970640-11970965 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 107, 56 |
| Conread position: | 73-401 |
| Cow position: | chr8:44121784-44121454 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 73-408 |
| Cow position: | chr8:8910158-8909827 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 238, 157 |
| Conread position: | 73-408 |
| Cow position: | chr8:33429838-33429518 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 163, 43 |
| Conread position: | 73-408 |
| Cow position: | chr8:38390290-38389962 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 73-408 |
| Cow position: | chr8:44244653-44244981 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 270, 120 |
| Conread position: | 73-411 |
| Cow position: | chr8:42161729-42162062 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 157, 62 |
| Conread position: | 73-425 |
| Cow position: | chr8:14929106-14929452 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 263, 157 |
| Conread position: | 73-515 |
| Cow position: | chr8:45161437-45161880 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 156, 13 |
| Conread position: | 73-692 |
| Cow position: | chr8:13735575-13734965 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 77-386 |
| Cow position: | chr8:59262975-59263277 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 266, 144 |
| Conread position: | 77-387 |
| Cow position: | chr8:23770558-23770254 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 263, 153 |
| Conread position: | 77-408 |
| Cow position: | chr8:49214347-49214022 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 221, 153 |
| Conread position: | 77-416 |
| Cow position: | chr8:3784499-3784163 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 183, 153 |
| Conread position: | 78-387 |
| Cow position: | chr8:14592496-14592795 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 265, 148 |
| Conread position: | 86-387 |
| Cow position: | chr8:50289266-50289556 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 257, 7 |
| Conread position: | 107-371 |
| Cow position: | chr8:9264383-9264637 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 112-433 |
| Cow position: | chr8:38607639-38607958 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 133-452 |
| Cow position: | chr8:12715847-12715554 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 137-486 |
| Cow position: | chr8:23766489-23766829 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 138-432 |
| Cow position: | chr8:11590498-11590213 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 49 |
| Conread position: | 158-408 |
| Cow position: | chr8:61036057-61036298 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 178, 29 |
| Conread position: | 162-628 |
| Cow position: | chr8:45693541-45694010 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 246-399 |
| Cow position: | chr8:48783793-48783637 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 390-651 |
| Cow position: | chr8:50752928-50752663 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 57 |
Show alignments to all cow chromosomes.