Cow genome map

Conread name: Ss1.1-rcbl0_018774.5

Conread position: 1-490
Cow position: chr9:31776615-31776124 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 318
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 78, 104

Conread position: 1-498
Cow position: chr9:35657636-35657150 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 67

Conread position: 5-658
Cow position: chr9:64118493-64117858 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 67

Conread position: 6-299
Cow position: chr9:6973820-6973530 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 207
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 79, 187

Conread position: 6-379
Cow position: chr9:15072179-15071808 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 34, 61

Conread position: 6-598
Cow position: chr9:2052113-2051541 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 234

Conread position: 8-708
Cow position: chr9:20310070-20310770 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 108

Conread position: 9-387
Cow position: chr9:12845878-12846248 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 104

Conread position: 13-487
Cow position: chr9:26712661-26713123 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 310
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 23, 19

Conread position: 13-488
Cow position: chr9:4027454-4027923 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 20

Conread position: 16-283
Cow position: chr9:39992573-39992308 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 39

Conread position: 16-661
Cow position: chr9:6111306-6111931 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 83

Conread position: 22-224
Cow position: chr9:4672233-4672032 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 11

Conread position: 22-225
Cow position: chr9:3006649-3006850 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 136
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 22-225
Cow position: chr9:27933720-27933516 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 11

Conread position: 22-225
Cow position: chr9:34242972-34243176 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 11

Conread position: 22-225
Cow position: chr9:45872980-45872776 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 12

Conread position: 22-225
Cow position: chr9:46626173-46626375 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 27, 11

Conread position: 28-387
Cow position: chr9:16175388-16175034 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 5

Conread position: 29-407
Cow position: chr9:55616977-55616603 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 247
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 9, 79

Conread position: 32-490
Cow position: chr9:3938174-3938609 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 297
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 86

Conread position: 33-387
Cow position: chr9:31807156-31806805 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 236
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 199

Conread position: 37-408
Cow position: chr9:9012721-9012352 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 249
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 196

Conread position: 38-408
Cow position: chr9:54360218-54359851 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 233
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 11, 188

Conread position: 53-326
Cow position: chr9:3867905-3868170 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 12, 111

Conread position: 53-624
Cow position: chr9:4984377-4983826 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 91

Conread position: 57-407
Cow position: chr9:52290230-52289876 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 46

Conread position: 57-408
Cow position: chr9:42904086-42904428 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 272, 171

Conread position: 57-493
Cow position: chr9:14961839-14962269 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 141

Conread position: 57-545
Cow position: chr9:6757160-6756677 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 44

Conread position: 59-199
Cow position: chr9:8166416-8166555 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 54, 42

Conread position: 64-327
Cow position: chr9:2630104-2629847 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 177, 88

Conread position: 70-219
Cow position: chr9:2493042-2493190 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 73-371
Cow position: chr9:417957-418245 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 37

Conread position: 73-386
Cow position: chr9:59483095-59483397 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 270, 76

Conread position: 73-386
Cow position: chr9:59535673-59535372 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 270, 109

Conread position: 73-387
Cow position: chr9:2170632-2170324 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 205
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr9:2199685-2199382 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 205
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 270, 81

Conread position: 73-387
Cow position: chr9:3548596-3548904 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 217
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 269, 157

Conread position: 73-387
Cow position: chr9:7002128-7001821 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 202
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr9:10855774-10855465 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 45, 158

Conread position: 73-387
Cow position: chr9:18510150-18510457 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 214
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 270, 157

Conread position: 73-387
Cow position: chr9:27034283-27033975 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 208
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 238, 111

Conread position: 73-387
Cow position: chr9:30671944-30671637 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 270, 114

Conread position: 73-387
Cow position: chr9:37163234-37163539 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 262, 83

Conread position: 73-387
Cow position: chr9:37971633-37971942 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 30, 37

Conread position: 73-387
Cow position: chr9:42309257-42308948 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 106, 158

Conread position: 73-387
Cow position: chr9:59456025-59456331 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 30, 37

Conread position: 73-409
Cow position: chr9:6830970-6831300 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 224
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 270, 153

Conread position: 73-425
Cow position: chr9:29629173-29629520 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 226
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 267, 157

Conread position: 77-387
Cow position: chr9:42568443-42568139 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 263, 153

Conread position: 77-431
Cow position: chr9:51183138-51183487 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 266, 153

Conread position: 94-387
Cow position: chr9:1996366-1996642 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 193
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 106-660
Cow position: chr9:26237654-26237126 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 81

Conread position: 112-527
Cow position: chr9:13219916-13219492 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 270
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 14, 19

Conread position: 122-494
Cow position: chr9:5425218-5425578 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 244
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 183, 70

Conread position: 143-540
Cow position: chr9:34107348-34107740 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 49

Conread position: 154-485
Cow position: chr9:26103097-26103417 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 161, 66

Conread position: 169-419
Cow position: chr9:8969544-8969800 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 165
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 187-624
Cow position: chr9:23401112-23400679 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 7

Conread position: 191-599
Cow position: chr9:18836181-18835788 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 30

Conread position: 247-422
Cow position: chr9:17527335-17527516 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 173

Conread position: 247-618
Cow position: chr9:8166803-8167181 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 259
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 9, 140

Conread position: 248-490
Cow position: chr9:240669-240911 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 34, 20

Conread position: 249-661
Cow position: chr9:52569847-52569438 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 267
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 10, 245

Conread position: 251-404
Cow position: chr9:3802916-3802764 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 151, 57

Conread position: 281-659
Cow position: chr9:2196355-2195980 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 61, 126

Conread position: 285-635
Cow position: chr9:3579715-3580067 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 242
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 117, 50

Conread position: 343-496
Cow position: chr9:39991972-39991820 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 61

Show alignments to all cow chromosomes.