Cow genome map
| Conread name: | Ss1.1-rcbl0_018774.5 |
| Conread position: | 2-334 |
| Cow position: | chrX:20698705-20699038 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 6-529 |
| Cow position: | chrX:22131125-22131669 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 7-379 |
| Cow position: | chrX:13007066-13007439 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 8-388 |
| Cow position: | chrX:24275238-24274869 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 58 |
| Conread position: | 8-413 |
| Cow position: | chrX:6886802-6887186 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 290 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 36, 189 |
| Conread position: | 8-422 |
| Cow position: | chrX:29794556-29794968 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 179 |
| Conread position: | 8-582 |
| Cow position: | chrX:13052239-13051667 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 85 |
| Conread position: | 8-661 |
| Cow position: | chrX:2142867-2142211 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 9-599 |
| Cow position: | chrX:21270616-21271208 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 225 |
| Conread position: | 12-462 |
| Cow position: | chrX:24139436-24139876 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 21-233 |
| Cow position: | chrX:26400934-26401146 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 22-225 |
| Cow position: | chrX:3421907-3422112 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 22-225 |
| Cow position: | chrX:12704380-12704585 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 22-225 |
| Cow position: | chrX:13097734-13097936 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 169, 11 |
| Conread position: | 22-225 |
| Cow position: | chrX:20316522-20316724 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 22-225 |
| Cow position: | chrX:21489765-21489566 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-225 |
| Cow position: | chrX:29174066-29174269 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 22-225 |
| Cow position: | chrX:37848544-37848337 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-226 |
| Cow position: | chrX:28506407-28506611 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 22-233 |
| Cow position: | chrX:2603580-2603371 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 23-225 |
| Cow position: | chrX:12280725-12280928 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 26-225 |
| Cow position: | chrX:24088930-24088730 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 27-359 |
| Cow position: | chrX:16017597-16017935 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 28-708 |
| Cow position: | chrX:18532531-18531821 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 6 |
| Conread position: | 32-387 |
| Cow position: | chrX:15598452-15598102 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 41, 191 |
| Conread position: | 38-498 |
| Cow position: | chrX:31192245-31192691 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 188 |
| Conread position: | 47-655 |
| Cow position: | chrX:24376880-24376270 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 51-408 |
| Cow position: | chrX:21586537-21586168 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 137, 22 |
| Conread position: | 54-483 |
| Cow position: | chrX:12998086-12998491 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 57-402 |
| Cow position: | chrX:19927809-19927469 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 202, 171 |
| Conread position: | 57-623 |
| Cow position: | chrX:31080031-31079475 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 57-633 |
| Cow position: | chrX:19185448-19186014 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 57-670 |
| Cow position: | chrX:30369477-30370081 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 98 |
| Conread position: | 57-708 |
| Cow position: | chrX:28549399-28548758 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 120 |
| Conread position: | 60-700 |
| Cow position: | chrX:34988138-34987527 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 64-226 |
| Cow position: | chrX:17632338-17632500 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-349 |
| Cow position: | chrX:29882757-29883036 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 178, 30 |
| Conread position: | 64-406 |
| Cow position: | chrX:2787724-2788061 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 126, 165 |
| Conread position: | 70-484 |
| Cow position: | chrX:22893878-22894295 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 137, 120 |
| Conread position: | 73-371 |
| Cow position: | chrX:23456091-23456380 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-372 |
| Cow position: | chrX:41151707-41151414 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chrX:970254-969949 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chrX:16698781-16698471 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 224, 148 |
| Conread position: | 73-387 |
| Cow position: | chrX:23276599-23276292 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-387 |
| Cow position: | chrX:25187139-25186832 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 263, 120 |
| Conread position: | 73-387 |
| Cow position: | chrX:26759111-26759418 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 73-387 |
| Cow position: | chrX:38145540-38145233 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-388 |
| Cow position: | chrX:1546414-1546105 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-399 |
| Cow position: | chrX:15127763-15128080 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 121 |
| Conread position: | 73-399 |
| Cow position: | chrX:28553503-28553178 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 128, 81 |
| Conread position: | 73-400 |
| Cow position: | chrX:16236802-16236481 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 179, 47 |
| Conread position: | 73-405 |
| Cow position: | chrX:26527455-26527130 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 270, 157 |
| Conread position: | 73-408 |
| Cow position: | chrX:2483160-2483487 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 270, 76 |
| Conread position: | 73-408 |
| Cow position: | chrX:23392122-23392452 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 270, 140 |
| Conread position: | 75-345 |
| Cow position: | chrX:11668958-11669218 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 157, 25 |
| Conread position: | 75-413 |
| Cow position: | chrX:32430163-32429839 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 108 |
| Conread position: | 77-387 |
| Cow position: | chrX:13413640-13413950 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 148, 170 |
| Conread position: | 77-408 |
| Cow position: | chrX:29284211-29283883 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 150, 116 |
| Conread position: | 78-399 |
| Cow position: | chrX:26767717-26768037 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 28 |
| Conread position: | 79-499 |
| Cow position: | chrX:21316661-21316243 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 276 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 88, 121 |
| Conread position: | 87-387 |
| Cow position: | chrX:318553-318260 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 256, 143 |
| Conread position: | 116-285 |
| Cow position: | chrX:19872616-19872448 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 144-708 |
| Cow position: | chrX:17668995-17669549 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 70 |
| Conread position: | 193-425 |
| Cow position: | chrX:17887960-17887728 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 234-434 |
| Cow position: | chrX:24175472-24175673 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 183 |
| Conread position: | 240-408 |
| Cow position: | chrX:31035016-31034846 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 243-404 |
| Cow position: | chrX:31372274-31372109 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 256-432 |
| Cow position: | chrX:12974358-12974538 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 337-627 |
| Cow position: | chrX:20699181-20699469 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 81, 110 |
Show alignments to all cow chromosomes.