Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-274
Cow position: chr1:55322809-55322544 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 1-310
Cow position: chr1:42869994-42869685 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 102, 54

Conread position: 1-383
Cow position: chr1:94253166-94253546 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 69

Conread position: 1-457
Cow position: chr1:24651004-24651440 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 68

Conread position: 1-684
Cow position: chr1:40513132-40512447 (view UCSC Genome Browser custom track)
Alignm length: 698
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 56

Conread position: 1-732
Cow position: chr1:67286734-67287467 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 140

Conread position: 2-258
Cow position: chr1:38387458-38387219 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 185
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 101, 67

Conread position: 3-160
Cow position: chr1:89479555-89479713 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 95, 66

Conread position: 3-570
Cow position: chr1:21720139-21720692 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 69

Conread position: 83-598
Cow position: chr1:73011105-73011616 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 339
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 81, 21

Conread position: 127-538
Cow position: chr1:77656137-77656532 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 275
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 53, 36

Conread position: 155-732
Cow position: chr1:31418473-31417874 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 8

Conread position: 158-719
Cow position: chr1:29033184-29033748 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 55

Conread position: 168-731
Cow position: chr1:33389198-33389774 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 45

Conread position: 171-434
Cow position: chr1:34690099-34690361 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 49, 189

Conread position: 221-537
Cow position: chr1:86609981-86610279 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 222
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 0

Conread position: 221-728
Cow position: chr1:72943670-72944173 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 153

Conread position: 226-692
Cow position: chr1:46836105-46836556 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 310
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 21, 12

Conread position: 227-639
Cow position: chr1:63501988-63502406 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 162

Conread position: 231-731
Cow position: chr1:80664990-80665484 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 332
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 28

Conread position: 233-468
Cow position: chr1:84150145-84150380 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 194

Conread position: 245-547
Cow position: chr1:91445432-91445734 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 34, 74

Conread position: 245-685
Cow position: chr1:88270058-88269617 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 161

Conread position: 251-703
Cow position: chr1:67328101-67327655 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 24

Conread position: 252-489
Cow position: chr1:29413982-29413749 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 188
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 31, 146

Conread position: 258-731
Cow position: chr1:30518868-30519335 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 5

Conread position: 261-706
Cow position: chr1:30059095-30059536 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 311
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 77, 116

Conread position: 262-558
Cow position: chr1:79110332-79110621 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 277, 21

Conread position: 262-609
Cow position: chr1:78361321-78361665 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 236
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 7, 18

Conread position: 266-683
Cow position: chr1:31330211-31329796 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 297
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 10, 107

Conread position: 268-662
Cow position: chr1:22344110-22344485 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 279
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 16, 49

Conread position: 268-731
Cow position: chr1:15026534-15027000 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 102

Conread position: 277-732
Cow position: chr1:55321955-55321501 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 21

Conread position: 279-731
Cow position: chr1:77111819-77111389 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 303
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 54, 72

Conread position: 283-541
Cow position: chr1:38387151-38386902 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 40, 101

Conread position: 284-501
Cow position: chr1:58179502-58179293 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 28, 0

Conread position: 284-704
Cow position: chr1:56446005-56446420 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 271
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 67, 38

Conread position: 284-719
Cow position: chr1:98659686-98659254 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 298
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 48, 98

Conread position: 285-496
Cow position: chr1:7143561-7143355 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 20

Conread position: 285-697
Cow position: chr1:22842838-22843249 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 274
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 51, 198

Conread position: 289-554
Cow position: chr1:72137198-72137466 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 137, 10

Conread position: 289-580
Cow position: chr1:44101165-44100873 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 211
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 19, 105

Conread position: 290-603
Cow position: chr1:98864531-98864218 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 99

Conread position: 294-652
Cow position: chr1:29609458-29609104 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 39, 110

Conread position: 301-696
Cow position: chr1:18013293-18012898 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 74

Conread position: 302-732
Cow position: chr1:32661952-32662387 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 281
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 161, 13

Conread position: 302-732
Cow position: chr1:74859442-74859881 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 280
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 37, 13

Conread position: 303-614
Cow position: chr1:99675522-99675209 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 32, 82

Conread position: 306-732
Cow position: chr1:43985866-43985438 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 270
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 120, 36

Conread position: 307-501
Cow position: chr1:59934365-59934564 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 126

Conread position: 309-731
Cow position: chr1:31811302-31811716 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 292
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 24, 100

Conread position: 313-697
Cow position: chr1:67315169-67315549 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 244
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 65

Conread position: 316-714
Cow position: chr1:91899213-91899617 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 104

Conread position: 330-655
Cow position: chr1:31421328-31421013 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 210, 55

Conread position: 350-558
Cow position: chr1:45019614-45019410 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 153
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 192, 21

Conread position: 355-700
Cow position: chr1:23052056-23052398 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 117

Conread position: 356-582
Cow position: chr1:20307364-20307574 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 368-696
Cow position: chr1:28711190-28711520 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 373-732
Cow position: chr1:63605495-63605136 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 33

Conread position: 374-654
Cow position: chr1:89770378-89770095 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 14

Conread position: 386-697
Cow position: chr1:22905076-22905380 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 124, 50

Conread position: 391-556
Cow position: chr1:59674751-59674916 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 9, 25

Conread position: 391-732
Cow position: chr1:56144037-56143692 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 47

Conread position: 392-556
Cow position: chr1:1461030-1460868 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 8, 24

Conread position: 392-662
Cow position: chr1:72981569-72981843 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-662
Cow position: chr1:85780478-85780204 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 59

Conread position: 392-698
Cow position: chr1:82923877-82923569 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-706
Cow position: chr1:68607241-68606924 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 392-730
Cow position: chr1:33551226-33551564 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 392-731
Cow position: chr1:88131073-88131415 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:3385718-3385377 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr1:25179728-25179385 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr1:30534722-30534378 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:42736754-42737098 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr1:49973888-49973548 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr1:52358975-52358632 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 47

Conread position: 392-732
Cow position: chr1:57568254-57568576 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr1:58336137-58336478 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:58883765-58883422 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr1:62244345-62244000 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:65386630-65386972 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 48

Conread position: 392-732
Cow position: chr1:69403282-69403626 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 392-732
Cow position: chr1:69922136-69921795 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr1:72186579-72186239 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr1:73070754-73070410 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:76545236-76544896 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 46

Conread position: 392-732
Cow position: chr1:79456670-79456330 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 40

Conread position: 392-732
Cow position: chr1:86698915-86698575 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr1:91892821-91892476 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:93854823-93855159 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr1:94659984-94660315 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:99913719-99914063 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr1:102434737-102434398 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 393-555
Cow position: chr1:56193628-56193467 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 17

Conread position: 393-731
Cow position: chr1:57366829-57366484 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 393-731
Cow position: chr1:76752350-76752007 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 46

Conread position: 393-732
Cow position: chr1:12061910-12061575 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 394-732
Cow position: chr1:71562274-71561933 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 396-696
Cow position: chr1:79636627-79636347 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 25

Conread position: 397-557
Cow position: chr1:28723179-28723340 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 149

Conread position: 401-528
Cow position: chr1:18405885-18405758 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 14

Conread position: 401-530
Cow position: chr1:45098007-45098136 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 28, 14

Conread position: 401-530
Cow position: chr1:87207116-87206987 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 23, 14

Conread position: 401-531
Cow position: chr1:78290171-78290305 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 110, 15

Conread position: 401-537
Cow position: chr1:69537209-69537345 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 114
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 23, 14

Conread position: 401-544
Cow position: chr1:89899393-89899254 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 23, 14

Conread position: 401-544
Cow position: chr1:97124120-97124262 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 23, 15

Conread position: 401-545
Cow position: chr1:38415110-38415253 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 14

Conread position: 401-639
Cow position: chr1:33712376-33712616 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 28, 15

Conread position: 401-706
Cow position: chr1:72081091-72081395 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 401-723
Cow position: chr1:97226399-97226080 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 14

Conread position: 401-730
Cow position: chr1:8825362-8825693 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 15

Conread position: 401-730
Cow position: chr1:21999645-21999316 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 37

Conread position: 401-730
Cow position: chr1:48246157-48246470 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 14

Conread position: 401-731
Cow position: chr1:102549547-102549873 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 8

Conread position: 401-732
Cow position: chr1:17941475-17941144 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 8

Conread position: 401-732
Cow position: chr1:18027457-18027116 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 17

Conread position: 401-732
Cow position: chr1:28873386-28873720 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 401-732
Cow position: chr1:80358877-80358541 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 401-732
Cow position: chr1:85882314-85882638 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 37

Conread position: 403-732
Cow position: chr1:95239675-95240008 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 218

Conread position: 404-732
Cow position: chr1:31365775-31365447 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 199

Conread position: 404-732
Cow position: chr1:33851585-33851925 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 0

Conread position: 405-718
Cow position: chr1:77511619-77511299 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 134, 11

Conread position: 409-555
Cow position: chr1:62853533-62853390 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 409-730
Cow position: chr1:17012426-17012101 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 409-732
Cow position: chr1:40684378-40684057 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 81

Conread position: 409-732
Cow position: chr1:56490162-56490491 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 409-732
Cow position: chr1:86547822-86547499 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 108

Conread position: 410-731
Cow position: chr1:40053668-40053993 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 410-732
Cow position: chr1:8554641-8554971 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 79

Conread position: 411-542
Cow position: chr1:40954214-40954346 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 411-722
Cow position: chr1:9382233-9381914 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 49

Conread position: 411-731
Cow position: chr1:40574528-40574852 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-731
Cow position: chr1:82912829-82912504 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 411-732
Cow position: chr1:11291791-11291468 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 205

Conread position: 411-732
Cow position: chr1:20829204-20829529 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-732
Cow position: chr1:21087728-21088053 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-732
Cow position: chr1:39544084-39544409 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 242

Conread position: 411-732
Cow position: chr1:56723469-56723798 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 411-732
Cow position: chr1:57424524-57424201 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 57

Conread position: 411-732
Cow position: chr1:67834826-67834501 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 175

Conread position: 411-732
Cow position: chr1:69766777-69767102 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-732
Cow position: chr1:82652968-82653305 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 217

Conread position: 411-732
Cow position: chr1:85792001-85792321 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 127

Conread position: 412-732
Cow position: chr1:29362611-29362937 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 216

Conread position: 412-732
Cow position: chr1:53198864-53199190 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 413-728
Cow position: chr1:31403178-31402855 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 238

Conread position: 421-596
Cow position: chr1:61309339-61309513 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 120, 21

Conread position: 421-698
Cow position: chr1:34692557-34692831 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 183, 20

Conread position: 422-643
Cow position: chr1:30283217-30282991 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 172
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 119, 0

Conread position: 422-731
Cow position: chr1:5355452-5355765 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-731
Cow position: chr1:29034627-29034933 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 35

Conread position: 422-732
Cow position: chr1:31397016-31397332 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 423-724
Cow position: chr1:69250615-69250921 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 211
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 116, 29

Conread position: 425-731
Cow position: chr1:43571071-43570766 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 12

Conread position: 429-725
Cow position: chr1:17036224-17035926 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 92

Conread position: 429-732
Cow position: chr1:18880060-18879754 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 197

Conread position: 429-732
Cow position: chr1:82564836-82565143 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 429-732
Cow position: chr1:89425906-89426213 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 432-719
Cow position: chr1:60339641-60339929 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 157

Conread position: 433-729
Cow position: chr1:13450543-13450841 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 434-731
Cow position: chr1:82366523-82366823 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 48

Conread position: 438-732
Cow position: chr1:66999368-66999655 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 152

Conread position: 443-731
Cow position: chr1:55156650-55156361 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 192
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 11

Conread position: 446-732
Cow position: chr1:59209801-59209511 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 453-732
Cow position: chr1:57657167-57657438 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 91, 38

Conread position: 456-730
Cow position: chr1:24651644-24651923 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 459-728
Cow position: chr1:26518518-26518250 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 129

Conread position: 459-732
Cow position: chr1:56163913-56164189 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 49

Conread position: 460-703
Cow position: chr1:52325769-52325536 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 75, 101

Conread position: 463-565
Cow position: chr1:76622534-76622430 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 78, 0

Conread position: 463-732
Cow position: chr1:5502338-5502611 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 464-695
Cow position: chr1:28278340-28278575 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 75, 155

Conread position: 469-732
Cow position: chr1:91751090-91750823 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 473-702
Cow position: chr1:18242956-18242725 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 68, 177

Conread position: 473-724
Cow position: chr1:7142688-7142446 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 71

Conread position: 475-730
Cow position: chr1:25550344-25550599 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 170

Conread position: 479-732
Cow position: chr1:11860852-11860599 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 156

Conread position: 491-697
Cow position: chr1:56937635-56937428 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 56, 125

Conread position: 491-722
Cow position: chr1:40308670-40308905 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 491-725
Cow position: chr1:84150595-84150836 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 48, 178

Conread position: 494-723
Cow position: chr1:89481189-89481417 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 168
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 48, 196

Conread position: 498-731
Cow position: chr1:21936638-21936406 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 100

Conread position: 513-732
Cow position: chr1:55777002-55777224 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 527-719
Cow position: chr1:58178554-58178360 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 0

Conread position: 527-731
Cow position: chr1:57973234-57973027 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 14, 191

Conread position: 531-729
Cow position: chr1:9258933-9259133 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 73, 0

Conread position: 540-732
Cow position: chr1:6194685-6194874 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 159
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 64, 160

Conread position: 540-732
Cow position: chr1:44044228-44044422 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 151
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 64, 0

Conread position: 552-686
Cow position: chr1:1460726-1460590 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 567-732
Cow position: chr1:33896215-33896382 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 573-732
Cow position: chr1:76621204-76621042 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 31, 0

Conread position: 579-732
Cow position: chr1:24443835-24443682 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 45

Conread position: 580-732
Cow position: chr1:77117081-77116932 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 24, 122

Conread position: 618-732
Cow position: chr1:33712620-33712734 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.