Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-229
Cow position:
Alignm length: 233
Alignm identity: 173
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 88, 41

Conread position: 1-259
Cow position:
Alignm length: 261
Alignm identity: 196
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 107, 33

Conread position: 1-467
Cow position:
Alignm length: 476
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 68

Conread position: 3-153
Cow position:
Alignm length: 153
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 55

Conread position: 3-192
Cow position:
Alignm length: 191
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 119

Conread position: 3-696
Cow position:
Alignm length: 707
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 66

Conread position: 125-478
Cow position:
Alignm length: 363
Alignm identity: 234
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 9

Conread position: 127-651
Cow position:
Alignm length: 534
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 18

Conread position: 160-441
Cow position:
Alignm length: 292
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 123, 247

Conread position: 160-537
Cow position:
Alignm length: 379
Alignm identity: 258
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 78, 95

Conread position: 171-649
Cow position:
Alignm length: 490
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 31

Conread position: 194-723
Cow position:
Alignm length: 539
Alignm identity: 348
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 82, 145

Conread position: 204-522
Cow position:
Alignm length: 319
Alignm identity: 224
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 36, 0

Conread position: 209-732
Cow position:
Alignm length: 537
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 180

Conread position: 227-617
Cow position:
Alignm length: 394
Alignm identity: 276
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 101, 39

Conread position: 233-695
Cow position:
Alignm length: 467
Alignm identity: 304
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 117

Conread position: 237-442
Cow position:
Alignm length: 211
Alignm identity: 165
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 41, 0

Conread position: 237-442
Cow position:
Alignm length: 211
Alignm identity: 165
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 41, 0

Conread position: 246-731
Cow position:
Alignm length: 495
Alignm identity: 320
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 34, 142

Conread position: 248-724
Cow position:
Alignm length: 488
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 68

Conread position: 251-620
Cow position:
Alignm length: 373
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 85

Conread position: 252-485
Cow position:
Alignm length: 234
Alignm identity: 161
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 261-697
Cow position:
Alignm length: 445
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 36

Conread position: 262-705
Cow position:
Alignm length: 465
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 430

Conread position: 266-731
Cow position:
Alignm length: 473
Alignm identity: 300
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 8, 18

Conread position: 268-732
Cow position:
Alignm length: 477
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 133

Conread position: 276-725
Cow position:
Alignm length: 470
Alignm identity: 315
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 205, 134

Conread position: 278-382
Cow position:
Alignm length: 106
Alignm identity: 88
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 279-684
Cow position:
Alignm length: 417
Alignm identity: 270
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 95, 88

Conread position: 279-732
Cow position:
Alignm length: 465
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 47

Conread position: 284-704
Cow position:
Alignm length: 427
Alignm identity: 291
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 55, 36

Conread position: 290-731
Cow position:
Alignm length: 446
Alignm identity: 296
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 44, 100

Conread position: 293-519
Cow position:
Alignm length: 231
Alignm identity: 161
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 13, 78

Conread position: 294-694
Cow position:
Alignm length: 410
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 18

Conread position: 296-541
Cow position:
Alignm length: 246
Alignm identity: 183
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 301-732
Cow position:
Alignm length: 440
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 62

Conread position: 302-722
Cow position:
Alignm length: 429
Alignm identity: 273
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 82

Conread position: 304-732
Cow position:
Alignm length: 437
Alignm identity: 288
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 83, 13

Conread position: 307-732
Cow position:
Alignm length: 433
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 43

Conread position: 307-732
Cow position:
Alignm length: 436
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 78

Conread position: 317-731
Cow position:
Alignm length: 425
Alignm identity: 275
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 79, 51

Conread position: 322-669
Cow position:
Alignm length: 355
Alignm identity: 242
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 39, 80

Conread position: 324-731
Cow position:
Alignm length: 423
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 170

Conread position: 326-707
Cow position:
Alignm length: 395
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 31

Conread position: 327-534
Cow position:
Alignm length: 208
Alignm identity: 159
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 0

Conread position: 328-430
Cow position:
Alignm length: 103
Alignm identity: 85
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 356-732
Cow position:
Alignm length: 384
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 56

Conread position: 369-708
Cow position:
Alignm length: 345
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 27

Conread position: 383-547
Cow position:
Alignm length: 168
Alignm identity: 134
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 75, 26

Conread position: 388-731
Cow position:
Alignm length: 348
Alignm identity: 243
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 88, 26

Conread position: 390-731
Cow position:
Alignm length: 353
Alignm identity: 237
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 278

Conread position: 392-530
Cow position:
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 24

Conread position: 392-541
Cow position:
Alignm length: 151
Alignm identity: 123
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 8, 47

Conread position: 392-552
Cow position:
Alignm length: 162
Alignm identity: 134
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 8, 47

Conread position: 392-682
Cow position:
Alignm length: 295
Alignm identity: 186
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 392-732
Cow position:
Alignm length: 348
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 348
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 347
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 393-725
Cow position:
Alignm length: 338
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 24

Conread position: 393-725
Cow position:
Alignm length: 348
Alignm identity: 230
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 16

Conread position: 393-732
Cow position:
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 48

Conread position: 398-544
Cow position:
Alignm length: 153
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 398-649
Cow position:
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 122

Conread position: 401-544
Cow position:
Alignm length: 145
Alignm identity: 116
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 14

Conread position: 401-544
Cow position:
Alignm length: 145
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 28, 14

Conread position: 401-565
Cow position:
Alignm length: 165
Alignm identity: 131
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 401-732
Cow position:
Alignm length: 335
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 404-530
Cow position:
Alignm length: 128
Alignm identity: 102
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 20, 5

Conread position: 406-541
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 299

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 410-542
Cow position:
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 410-542
Cow position:
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 410-731
Cow position:
Alignm length: 341
Alignm identity: 233
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 36, 157

Conread position: 411-703
Cow position:
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 105

Conread position: 411-730
Cow position:
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-731
Cow position:
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-731
Cow position:
Alignm length: 325
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-732
Cow position:
Alignm length: 327
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 94

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 411-732
Cow position:
Alignm length: 330
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 88

Conread position: 420-732
Cow position:
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 18

Conread position: 422-685
Cow position:
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 69

Conread position: 422-722
Cow position:
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-731
Cow position:
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 226

Conread position: 422-732
Cow position:
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 86

Conread position: 422-732
Cow position:
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 155

Conread position: 429-732
Cow position:
Alignm length: 315
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 432-732
Cow position:
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 445-707
Cow position:
Alignm length: 274
Alignm identity: 192
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 103, 24

Conread position: 446-722
Cow position:
Alignm length: 281
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 447-732
Cow position:
Alignm length: 288
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 22

Conread position: 454-732
Cow position:
Alignm length: 283
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 455-720
Cow position:
Alignm length: 270
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 462-670
Cow position:
Alignm length: 213
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 79, 70

Conread position: 462-732
Cow position:
Alignm length: 275
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 28

Conread position: 463-732
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 236

Conread position: 466-732
Cow position:
Alignm length: 271
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 206

Conread position: 469-719
Cow position:
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 148

Conread position: 470-712
Cow position:
Alignm length: 248
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 147

Conread position: 472-696
Cow position:
Alignm length: 227
Alignm identity: 170
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 68, 121

Conread position: 473-732
Cow position:
Alignm length: 264
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 227

Conread position: 491-731
Cow position:
Alignm length: 244
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 66, 58

Conread position: 499-708
Cow position:
Alignm length: 218
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 29, 90

Conread position: 513-707
Cow position:
Alignm length: 200
Alignm identity: 138
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 26, 40

Conread position: 525-732
Cow position:
Alignm length: 210
Alignm identity: 154
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 17, 0

Conread position: 538-712
Cow position:
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 538-732
Cow position:
Alignm length: 197
Alignm identity: 153
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 66, 0

Conread position: 550-724
Cow position:
Alignm length: 175
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 551-732
Cow position:
Alignm length: 184
Alignm identity: 151
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 560-732
Cow position:
Alignm length: 175
Alignm identity: 137
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 44, 0

Conread position: 560-732
Cow position:
Alignm length: 175
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 21

Conread position: 577-696
Cow position:
Alignm length: 122
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 27, 39

Conread position: 581-732
Cow position:
Alignm length: 152
Alignm identity: 87
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 592-732
Cow position:
Alignm length: 141
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 81, 0

Conread position: 603-732
Cow position:
Alignm length: 130
Alignm identity: 102
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 615-732
Cow position:
Alignm length: 118
Alignm identity: 94
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 635-732
Cow position:
Alignm length: 98
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Show alignments to all cow chromosomes.