Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 214-696 |
| Cow position: | chr12:348476-348993 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 236-653 |
| Cow position: | chr12:21500557-21500968 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 122 |
| Conread position: | 262-565 |
| Cow position: | chr12:369745-370048 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 288-541 |
| Cow position: | chr12:21941910-21942162 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 307-697 |
| Cow position: | chr12:23163131-23162749 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 328-707 |
| Cow position: | chr12:1869478-1869857 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 342-556 |
| Cow position: | chr12:44005191-44004984 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 359-728 |
| Cow position: | chr12:2282779-2283149 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 70 |
| Conread position: | 374-516 |
| Cow position: | chr12:5861408-5861548 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 381-732 |
| Cow position: | chr12:8197449-8197804 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 388-684 |
| Cow position: | chr12:37357772-37358059 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 7, 32 |
| Conread position: | 391-732 |
| Cow position: | chr12:25100811-25100468 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 392-698 |
| Cow position: | chr12:11098493-11098800 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-730 |
| Cow position: | chr12:28765768-28765431 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 392-732 |
| Cow position: | chr12:1402741-1403082 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr12:6406400-6406056 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr12:22205497-22205153 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr12:27932694-27932339 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr12:42859576-42859234 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 396-538 |
| Cow position: | chr12:251805-251665 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 398-544 |
| Cow position: | chr12:21902197-21902343 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 401-529 |
| Cow position: | chr12:45261884-45262012 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-544 |
| Cow position: | chr12:8311442-8311582 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 401-703 |
| Cow position: | chr12:21426946-21427251 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 401-732 |
| Cow position: | chr12:14662372-14662042 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 8 |
| Conread position: | 401-732 |
| Cow position: | chr12:21198221-21198553 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 14 |
| Conread position: | 409-687 |
| Cow position: | chr12:33986423-33986705 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 409-732 |
| Cow position: | chr12:4157638-4157965 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 410-732 |
| Cow position: | chr12:27855690-27855372 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 29 |
| Conread position: | 411-732 |
| Cow position: | chr12:32653807-32654131 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 411-732 |
| Cow position: | chr12:37558819-37559138 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 65 |
| Conread position: | 422-541 |
| Cow position: | chr12:21208680-21208798 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 422-701 |
| Cow position: | chr12:16821749-16822032 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 422-732 |
| Cow position: | chr12:43031111-43030799 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 86 |
| Conread position: | 429-698 |
| Cow position: | chr12:21254376-21254110 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 114 |
| Conread position: | 463-696 |
| Cow position: | chr12:8677767-8677540 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 123 |
| Conread position: | 464-732 |
| Cow position: | chr12:601041-600768 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 244 |
| Conread position: | 469-731 |
| Cow position: | chr12:21371003-21371261 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 115 |
| Conread position: | 482-718 |
| Cow position: | chr12:6493078-6492841 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 509-619 |
| Cow position: | chr12:36482802-36482912 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 509-731 |
| Cow position: | chr12:36367197-36367423 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 509-731 |
| Cow position: | chr12:36448942-36449169 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 509-732 |
| Cow position: | chr12:36427600-36427827 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 509-732 |
| Cow position: | chr12:36479538-36479765 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 515-696 |
| Cow position: | chr12:20997721-20997538 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 567-732 |
| Cow position: | chr12:21942160-21942324 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 37, 155 |
| Conread position: | 568-732 |
| Cow position: | chr12:21209090-21209246 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 577-732 |
| Cow position: | chr12:35314220-35314066 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 145 |
| Conread position: | 585-732 |
| Cow position: | chr12:25263028-25262879 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 603-732 |
| Cow position: | chr12:1889052-1888923 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.