Cow genome map
Conread name: | Ss1.1-rcbl0_018973.5 |
Conread position: | 1-324 |
Cow position: | chr13:54284546-54284865 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 238 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 102, 57 |
Conread position: | 1-722 |
Cow position: | chr13:20542399-20541672 (view UCSC Genome Browser custom track) |
Alignm length: | 743 |
Alignm identity: | 555 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 68 |
Conread position: | 1-722 |
Cow position: | chr13:34937123-34937844 (view UCSC Genome Browser custom track) |
Alignm length: | 741 |
Alignm identity: | 516 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 69 |
Conread position: | 7-470 |
Cow position: | chr13:15451574-15451132 (view UCSC Genome Browser custom track) |
Alignm length: | 468 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 39 |
Conread position: | 26-696 |
Cow position: | chr13:26843794-26844424 (view UCSC Genome Browser custom track) |
Alignm length: | 681 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 44 |
Conread position: | 118-676 |
Cow position: | chr13:29202607-29202040 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 46 |
Conread position: | 137-702 |
Cow position: | chr13:34048400-34048966 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 6, 19 |
Conread position: | 168-565 |
Cow position: | chr13:11764010-11763609 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 266 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 94, 17 |
Conread position: | 172-722 |
Cow position: | chr13:43983272-43982720 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 254 |
Conread position: | 219-549 |
Cow position: | chr13:34767012-34766684 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 130 |
Conread position: | 222-708 |
Cow position: | chr13:60700991-60700513 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 32 |
Conread position: | 231-706 |
Cow position: | chr13:19413101-19413560 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 320 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 15, 39 |
Conread position: | 251-483 |
Cow position: | chr13:34186618-34186394 (view UCSC Genome Browser custom track) |
Alignm length: | 236 |
Alignm identity: | 171 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 26, 167 |
Conread position: | 278-565 |
Cow position: | chr13:48357486-48357767 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 58 |
Conread position: | 278-706 |
Cow position: | chr13:46731803-46731385 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 58 |
Conread position: | 290-697 |
Cow position: | chr13:31556789-31556385 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 79 |
Conread position: | 290-731 |
Cow position: | chr13:22185299-22184869 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 16 |
Conread position: | 291-723 |
Cow position: | chr13:2582734-2582301 (view UCSC Genome Browser custom track) |
Alignm length: | 444 |
Alignm identity: | 289 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 38, 139 |
Conread position: | 305-695 |
Cow position: | chr13:22697570-22697954 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 254 |
Alignm E-value: | 9e-28 |
Alignm gaps (pig, cow): | 31, 124 |
Conread position: | 313-731 |
Cow position: | chr13:43855594-43856022 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 282 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 27, 97 |
Conread position: | 316-550 |
Cow position: | chr13:30262314-30262546 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 168 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 31, 20 |
Conread position: | 322-676 |
Cow position: | chr13:34029030-34029390 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 257 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 13, 34 |
Conread position: | 326-732 |
Cow position: | chr13:35030506-35030907 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 116 |
Conread position: | 343-685 |
Cow position: | chr13:21131920-21132269 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 241 |
Alignm E-value: | 5.00264e-43 |
Alignm gaps (pig, cow): | 196, 47 |
Conread position: | 345-682 |
Cow position: | chr13:11064179-11063858 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 360-725 |
Cow position: | chr13:27922229-27921870 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 193, 8 |
Conread position: | 385-554 |
Cow position: | chr13:2908410-2908239 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 138 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 15, 31 |
Conread position: | 391-732 |
Cow position: | chr13:34868771-34869114 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 19 |
Conread position: | 392-531 |
Cow position: | chr13:4178621-4178481 (view UCSC Genome Browser custom track) |
Alignm length: | 143 |
Alignm identity: | 109 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 31, 6 |
Conread position: | 392-537 |
Cow position: | chr13:33927557-33927417 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 111 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 8, 24 |
Conread position: | 392-718 |
Cow position: | chr13:27652633-27652961 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 215 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 35, 132 |
Conread position: | 392-732 |
Cow position: | chr13:1593125-1592783 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 6 |
Conread position: | 392-732 |
Cow position: | chr13:4483824-4484168 (view UCSC Genome Browser custom track) |
Alignm length: | 348 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 47 |
Conread position: | 392-732 |
Cow position: | chr13:4941118-4941455 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 47 |
Conread position: | 392-732 |
Cow position: | chr13:9044530-9044874 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 47 |
Conread position: | 392-732 |
Cow position: | chr13:15520485-15520138 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 47 |
Conread position: | 392-732 |
Cow position: | chr13:15924354-15924010 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 47 |
Conread position: | 392-732 |
Cow position: | chr13:30238276-30238618 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 23 |
Conread position: | 392-732 |
Cow position: | chr13:32737792-32737455 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 35 |
Conread position: | 392-732 |
Cow position: | chr13:32985323-32984982 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 332 |
Conread position: | 392-732 |
Cow position: | chr13:34042339-34042000 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 24 |
Conread position: | 392-732 |
Cow position: | chr13:35757271-35757615 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 48 |
Conread position: | 394-554 |
Cow position: | chr13:31832628-31832785 (view UCSC Genome Browser custom track) |
Alignm length: | 165 |
Alignm identity: | 124 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 27, 96 |
Conread position: | 401-535 |
Cow position: | chr13:3277194-3277328 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 106 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 23, 89 |
Conread position: | 401-535 |
Cow position: | chr13:34693205-34693339 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 111 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 23, 14 |
Conread position: | 401-652 |
Cow position: | chr13:22766063-22766318 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 216 |
Conread position: | 401-732 |
Cow position: | chr13:3654284-3653951 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 37 |
Conread position: | 401-732 |
Cow position: | chr13:6668080-6667746 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 8 |
Conread position: | 401-732 |
Cow position: | chr13:23003269-23002935 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 37 |
Conread position: | 401-732 |
Cow position: | chr13:30303316-30303652 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 140, 14 |
Conread position: | 401-732 |
Cow position: | chr13:30656937-30656608 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 143, 14 |
Conread position: | 401-732 |
Cow position: | chr13:33336379-33336057 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 401-732 |
Cow position: | chr13:34325525-34325188 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 261 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 0 |
Conread position: | 401-732 |
Cow position: | chr13:50109493-50109827 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 145, 0 |
Conread position: | 411-530 |
Cow position: | chr13:34142614-34142494 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 99 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 411-732 |
Cow position: | chr13:30244636-30244311 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 411-732 |
Cow position: | chr13:31734043-31733718 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 0 |
Conread position: | 412-731 |
Cow position: | chr13:3058068-3057744 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 176 |
Conread position: | 412-732 |
Cow position: | chr13:60466379-60466700 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 92 |
Conread position: | 420-732 |
Cow position: | chr13:49973735-49974051 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 58 |
Conread position: | 422-730 |
Cow position: | chr13:2388765-2388446 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 0 |
Conread position: | 422-732 |
Cow position: | chr13:17308528-17308837 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 122, 99 |
Conread position: | 424-640 |
Cow position: | chr13:2296758-2296542 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 164 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 117, 73 |
Conread position: | 429-732 |
Cow position: | chr13:13324809-13325116 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 429-732 |
Cow position: | chr13:47229941-47229634 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 0 |
Conread position: | 443-691 |
Cow position: | chr13:22831610-22831357 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 169 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 99, 218 |
Conread position: | 447-732 |
Cow position: | chr13:21840119-21839831 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 22 |
Conread position: | 462-719 |
Cow position: | chr13:57023802-57024063 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 177 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 82, 12 |
Conread position: | 462-732 |
Cow position: | chr13:41315952-41316226 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 463-703 |
Cow position: | chr13:34911063-34910821 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 198 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 40 |
Conread position: | 469-732 |
Cow position: | chr13:58118807-58118541 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 19 |
Conread position: | 470-731 |
Cow position: | chr13:32545484-32545749 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 0 |
Conread position: | 470-732 |
Cow position: | chr13:31612201-31611934 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 472-732 |
Cow position: | chr13:15451001-15450742 (view UCSC Genome Browser custom track) |
Alignm length: | 266 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 11 |
Conread position: | 476-732 |
Cow position: | chr13:676970-677242 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 487-731 |
Cow position: | chr13:34206770-34206531 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 165 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 118, 29 |
Conread position: | 507-703 |
Cow position: | chr13:11799579-11799381 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 146 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 35, 22 |
Conread position: | 507-732 |
Cow position: | chr13:13900010-13900238 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 143 |
Conread position: | 540-732 |
Cow position: | chr13:5625900-5625710 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 143 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 137, 58 |
Conread position: | 559-732 |
Cow position: | chr13:18331606-18331781 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 146 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 590-732 |
Cow position: | chr13:12063726-12063582 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 112 |
Alignm E-value: | 8e-27 |
Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.