Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-324
Cow position: chr13:54284546-54284865 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 102, 57

Conread position: 1-722
Cow position: chr13:20542399-20541672 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 555
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 68

Conread position: 1-722
Cow position: chr13:34937123-34937844 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 69

Conread position: 7-470
Cow position: chr13:15451574-15451132 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 39

Conread position: 26-696
Cow position: chr13:26843794-26844424 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 44

Conread position: 118-676
Cow position: chr13:29202607-29202040 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 46

Conread position: 137-702
Cow position: chr13:34048400-34048966 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 19

Conread position: 168-565
Cow position: chr13:11764010-11763609 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 266
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 94, 17

Conread position: 172-722
Cow position: chr13:43983272-43982720 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 254

Conread position: 219-549
Cow position: chr13:34767012-34766684 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 130

Conread position: 222-708
Cow position: chr13:60700991-60700513 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 231-706
Cow position: chr13:19413101-19413560 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 320
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 15, 39

Conread position: 251-483
Cow position: chr13:34186618-34186394 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 26, 167

Conread position: 278-565
Cow position: chr13:48357486-48357767 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 58

Conread position: 278-706
Cow position: chr13:46731803-46731385 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 58

Conread position: 290-697
Cow position: chr13:31556789-31556385 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 79

Conread position: 290-731
Cow position: chr13:22185299-22184869 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 16

Conread position: 291-723
Cow position: chr13:2582734-2582301 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 289
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 139

Conread position: 305-695
Cow position: chr13:22697570-22697954 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 254
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 31, 124

Conread position: 313-731
Cow position: chr13:43855594-43856022 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 282
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 27, 97

Conread position: 316-550
Cow position: chr13:30262314-30262546 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 31, 20

Conread position: 322-676
Cow position: chr13:34029030-34029390 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 257
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 13, 34

Conread position: 326-732
Cow position: chr13:35030506-35030907 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 116

Conread position: 343-685
Cow position: chr13:21131920-21132269 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 241
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 196, 47

Conread position: 345-682
Cow position: chr13:11064179-11063858 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 360-725
Cow position: chr13:27922229-27921870 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 8

Conread position: 385-554
Cow position: chr13:2908410-2908239 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 15, 31

Conread position: 391-732
Cow position: chr13:34868771-34869114 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 392-531
Cow position: chr13:4178621-4178481 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 6

Conread position: 392-537
Cow position: chr13:33927557-33927417 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 8, 24

Conread position: 392-718
Cow position: chr13:27652633-27652961 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 215
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 35, 132

Conread position: 392-732
Cow position: chr13:1593125-1592783 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 6

Conread position: 392-732
Cow position: chr13:4483824-4484168 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr13:4941118-4941455 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr13:9044530-9044874 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 47

Conread position: 392-732
Cow position: chr13:15520485-15520138 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr13:15924354-15924010 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr13:30238276-30238618 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 23

Conread position: 392-732
Cow position: chr13:32737792-32737455 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 35

Conread position: 392-732
Cow position: chr13:32985323-32984982 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 332

Conread position: 392-732
Cow position: chr13:34042339-34042000 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr13:35757271-35757615 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 394-554
Cow position: chr13:31832628-31832785 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 96

Conread position: 401-535
Cow position: chr13:3277194-3277328 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 23, 89

Conread position: 401-535
Cow position: chr13:34693205-34693339 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 14

Conread position: 401-652
Cow position: chr13:22766063-22766318 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 216

Conread position: 401-732
Cow position: chr13:3654284-3653951 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 37

Conread position: 401-732
Cow position: chr13:6668080-6667746 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 8

Conread position: 401-732
Cow position: chr13:23003269-23002935 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 37

Conread position: 401-732
Cow position: chr13:30303316-30303652 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 14

Conread position: 401-732
Cow position: chr13:30656937-30656608 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 401-732
Cow position: chr13:33336379-33336057 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 401-732
Cow position: chr13:34325525-34325188 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 0

Conread position: 401-732
Cow position: chr13:50109493-50109827 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 0

Conread position: 411-530
Cow position: chr13:34142614-34142494 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 411-732
Cow position: chr13:30244636-30244311 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 411-732
Cow position: chr13:31734043-31733718 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 412-731
Cow position: chr13:3058068-3057744 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 176

Conread position: 412-732
Cow position: chr13:60466379-60466700 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 420-732
Cow position: chr13:49973735-49974051 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 58

Conread position: 422-730
Cow position: chr13:2388765-2388446 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position: chr13:17308528-17308837 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 99

Conread position: 424-640
Cow position: chr13:2296758-2296542 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 164
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 117, 73

Conread position: 429-732
Cow position: chr13:13324809-13325116 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 429-732
Cow position: chr13:47229941-47229634 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 0

Conread position: 443-691
Cow position: chr13:22831610-22831357 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 218

Conread position: 447-732
Cow position: chr13:21840119-21839831 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 22

Conread position: 462-719
Cow position: chr13:57023802-57024063 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 177
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 82, 12

Conread position: 462-732
Cow position: chr13:41315952-41316226 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 463-703
Cow position: chr13:34911063-34910821 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 40

Conread position: 469-732
Cow position: chr13:58118807-58118541 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 19

Conread position: 470-731
Cow position: chr13:32545484-32545749 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 470-732
Cow position: chr13:31612201-31611934 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 472-732
Cow position: chr13:15451001-15450742 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 11

Conread position: 476-732
Cow position: chr13:676970-677242 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 487-731
Cow position: chr13:34206770-34206531 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 118, 29

Conread position: 507-703
Cow position: chr13:11799579-11799381 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 35, 22

Conread position: 507-732
Cow position: chr13:13900010-13900238 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 143

Conread position: 540-732
Cow position: chr13:5625900-5625710 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 137, 58

Conread position: 559-732
Cow position: chr13:18331606-18331781 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 146
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 45, 0

Conread position: 590-732
Cow position: chr13:12063726-12063582 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 14, 0

Show alignments to all cow chromosomes.