Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-187
Cow position: chr16:49257077-49256896 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 1-688
Cow position: chr16:29033223-29033901 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 68

Conread position: 1-702
Cow position: chr16:25156717-25156004 (view UCSC Genome Browser custom track)
Alignm length: 724
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 71

Conread position: 1-731
Cow position: chr16:25257110-25257838 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 86

Conread position: 1-732
Cow position: chr16:42739917-42739205 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 542
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 9

Conread position: 1-732
Cow position: chr16:49235645-49234928 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 69

Conread position: 2-203
Cow position: chr16:16273328-16273132 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 88, 68

Conread position: 3-473
Cow position: chr16:5652273-5652742 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 327
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 86, 19

Conread position: 158-704
Cow position: chr16:47563722-47564277 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 153

Conread position: 159-447
Cow position: chr16:18499382-18499094 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 21, 30

Conread position: 160-499
Cow position: chr16:336044-336397 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 101, 37

Conread position: 160-669
Cow position: chr16:18764274-18763785 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 34

Conread position: 171-402
Cow position: chr16:30304941-30305178 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 100, 56

Conread position: 174-732
Cow position: chr16:23807778-23808324 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 79

Conread position: 192-508
Cow position: chr16:49256764-49256448 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 224

Conread position: 192-660
Cow position: chr16:5889890-5890343 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 61

Conread position: 193-696
Cow position: chr16:16272240-16271735 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 401

Conread position: 227-638
Cow position: chr16:6717145-6716720 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 271
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 47, 143

Conread position: 254-535
Cow position: chr16:37457165-37456876 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 24, 0

Conread position: 274-727
Cow position: chr16:48915704-48915255 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 305
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 26

Conread position: 277-731
Cow position: chr16:28437954-28437484 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 312
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 5, 19

Conread position: 284-719
Cow position: chr16:47473044-47473465 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 300
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 263, 37

Conread position: 290-541
Cow position: chr16:41756854-41756610 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 295-532
Cow position: chr16:6967829-6968071 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 125

Conread position: 295-732
Cow position: chr16:34529783-34530224 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 24

Conread position: 304-731
Cow position: chr16:26516952-26516514 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 105

Conread position: 350-707
Cow position: chr16:42186141-42185782 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 253
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 18, 151

Conread position: 359-722
Cow position: chr16:44410410-44410780 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 27

Conread position: 365-732
Cow position: chr16:25085177-25085522 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 15

Conread position: 373-697
Cow position: chr16:25170889-25171220 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 105

Conread position: 390-732
Cow position: chr16:31592349-31592010 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 26

Conread position: 391-731
Cow position: chr16:836602-836944 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 55

Conread position: 391-732
Cow position: chr16:9930495-9930837 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 13

Conread position: 392-558
Cow position: chr16:1431718-1431885 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 154, 23

Conread position: 392-724
Cow position: chr16:3070123-3069783 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 214
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 392-730
Cow position: chr16:1567894-1567552 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-730
Cow position: chr16:2727728-2727386 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-731
Cow position: chr16:27734232-27733889 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:407471-407131 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr16:5483883-5484223 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 40

Conread position: 392-732
Cow position: chr16:8816544-8816202 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 35

Conread position: 392-732
Cow position: chr16:10203870-10203536 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 392-732
Cow position: chr16:10437801-10438139 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:12538365-12538022 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 36

Conread position: 392-732
Cow position: chr16:14666269-14665909 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:15184363-15184694 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 47

Conread position: 392-732
Cow position: chr16:15566302-15566645 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position: chr16:23252947-23252606 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:25441184-25441529 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:25457905-25457561 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:26663309-26663652 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position: chr16:29046582-29046925 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:40296618-40296274 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr16:43897711-43897369 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 47

Conread position: 393-732
Cow position: chr16:23982871-23983212 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 36

Conread position: 394-561
Cow position: chr16:29675818-29675648 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 159

Conread position: 401-537
Cow position: chr16:20254741-20254605 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 23, 14

Conread position: 401-541
Cow position: chr16:50506757-50506898 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 124, 0

Conread position: 401-554
Cow position: chr16:19713319-19713164 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 14

Conread position: 401-730
Cow position: chr16:2411399-2411066 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 401-732
Cow position: chr16:2483572-2483237 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 14

Conread position: 401-732
Cow position: chr16:25341536-25341861 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 37

Conread position: 401-732
Cow position: chr16:28471532-28471199 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 14

Conread position: 402-544
Cow position: chr16:14430164-14430306 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 22, 13

Conread position: 407-703
Cow position: chr16:2239167-2238872 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 147

Conread position: 407-732
Cow position: chr16:32306-32635 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 317

Conread position: 409-732
Cow position: chr16:53045924-53046251 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 411-529
Cow position: chr16:36282974-36283091 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 23, 108

Conread position: 411-616
Cow position: chr16:18687551-18687341 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 0

Conread position: 411-730
Cow position: chr16:5661422-5661744 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 412-731
Cow position: chr16:31832204-31832528 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 176

Conread position: 422-732
Cow position: chr16:28170781-28170469 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 85

Conread position: 429-722
Cow position: chr16:41163469-41163172 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 429-732
Cow position: chr16:4302741-4302437 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 94

Conread position: 429-732
Cow position: chr16:10375988-10375696 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 170

Conread position: 447-732
Cow position: chr16:25188244-25188530 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 210

Conread position: 449-708
Cow position: chr16:18498701-18498441 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 19

Conread position: 453-731
Cow position: chr16:24105325-24105605 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 66

Conread position: 461-728
Cow position: chr16:25892347-25892615 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 199
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 83, 54

Conread position: 462-725
Cow position: chr16:26650868-26651135 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 80, 31

Conread position: 477-713
Cow position: chr16:25738144-25738374 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 92

Conread position: 479-732
Cow position: chr16:15492875-15493133 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 482-675
Cow position: chr16:36232090-36231897 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 62, 133

Conread position: 507-732
Cow position: chr16:4479309-4479080 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 512-732
Cow position: chr16:28198000-28197775 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 35, 0

Conread position: 521-722
Cow position: chr16:15476531-15476736 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 536-708
Cow position: chr16:15237450-15237621 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 157

Conread position: 536-723
Cow position: chr16:49256488-49256304 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 5, 32

Conread position: 538-731
Cow position: chr16:12670174-12669987 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 64, 137

Conread position: 538-732
Cow position: chr16:6943310-6943506 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 66, 0

Conread position: 545-704
Cow position: chr16:30049211-30049367 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 22

Conread position: 551-732
Cow position: chr16:1431906-1432093 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 53, 0

Conread position: 567-732
Cow position: chr16:37456289-37456123 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 73, 93

Conread position: 569-696
Cow position: chr16:41755974-41755845 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 35, 45

Conread position: 586-732
Cow position: chr16:43852363-43852216 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 18, 38

Conread position: 605-723
Cow position: chr16:51083535-51083651 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 625-732
Cow position: chr16:28377013-28377120 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.