Cow genome map


           Conread name:
           Ss1.1-rcbl0_018973.5
        

               Conread position:
               1-187
               

               Cow position:
               
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               1-688
               

               Cow position:
               
               

               Alignm length:
               703
               

               Alignm identity:
               515
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 68
               

               Conread position:
               1-702
               

               Cow position:
               
               

               Alignm length:
               724
               

               Alignm identity:
               540
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 71
               

               Conread position:
               1-731
               

               Cow position:
               
               

               Alignm length:
               742
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 86
               

               Conread position:
               1-732
               

               Cow position:
               
               

               Alignm length:
               741
               

               Alignm identity:
               542
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 9
               

               Conread position:
               1-732
               

               Cow position:
               
               

               Alignm length:
               744
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 69
               

               Conread position:
               2-203
               

               Cow position:
               
               

               Alignm length:
               205
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               88, 68
               

               Conread position:
               3-473
               

               Cow position:
               
               

               Alignm length:
               489
               

               Alignm identity:
               327
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               86, 19
               

               Conread position:
               158-704
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 153
               

               Conread position:
               159-447
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               21, 30
               

               Conread position:
               160-499
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-34
               

               Alignm gaps (pig, cow):
               101, 37
               

               Conread position:
               160-669
               

               Cow position:
               
               

               Alignm length:
               513
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 34
               

               Conread position:
               171-402
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               100, 56
               

               Conread position:
               174-732
               

               Cow position:
               
               

               Alignm length:
               568
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 79
               

               Conread position:
               192-508
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 224
               

               Conread position:
               192-660
               

               Cow position:
               
               

               Alignm length:
               480
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 61
               

               Conread position:
               193-696
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               368
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 401
               

               Conread position:
               227-638
               

               Cow position:
               
               

               Alignm length:
               431
               

               Alignm identity:
               271
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               47, 143
               

               Conread position:
               254-535
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               207
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               274-727
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               53, 26
               

               Conread position:
               277-731
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               312
               

               Alignm E-value:
               5.04467e-44
               

               Alignm gaps (pig, cow):
               5, 19
               

               Conread position:
               284-719
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               300
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               263, 37
               

               Conread position:
               290-541
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               295-532
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               20, 125
               

               Conread position:
               295-732
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 24
               

               Conread position:
               304-731
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 105
               

               Conread position:
               350-707
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               18, 151
               

               Conread position:
               359-722
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               49, 27
               

               Conread position:
               365-732
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 15
               

               Conread position:
               373-697
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 105
               

               Conread position:
               390-732
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 26
               

               Conread position:
               391-731
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 55
               

               Conread position:
               391-732
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 13
               

               Conread position:
               392-558
               

               Cow position:
               
               

               Alignm length:
               169
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               154, 23
               

               Conread position:
               392-724
               

               Cow position:
               
               

               Alignm length:
               341
               

               Alignm identity:
               214
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               392-730
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-730
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-731
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 40
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 35
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 41
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 48
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 47
               

               Conread position:
               393-732
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 36
               

               Conread position:
               394-561
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               21, 159
               

               Conread position:
               401-537
               

               Cow position:
               
               

               Alignm length:
               138
               

               Alignm identity:
               111
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               23, 14
               

               Conread position:
               401-541
               

               Cow position:
               
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               401-554
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               23, 14
               

               Conread position:
               401-730
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 14
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 37
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 14
               

               Conread position:
               402-544
               

               Cow position:
               
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               6e-26
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               407-703
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 147
               

               Conread position:
               407-732
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 317
               

               Conread position:
               409-732
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               411-529
               

               Cow position:
               
               

               Alignm length:
               120
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               23, 108
               

               Conread position:
               411-616
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               166
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               411-730
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               412-731
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 176
               

               Conread position:
               422-732
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 85
               

               Conread position:
               429-722
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               429-732
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 94
               

               Conread position:
               429-732
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 170
               

               Conread position:
               447-732
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 210
               

               Conread position:
               449-708
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 19
               

               Conread position:
               453-731
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 66
               

               Conread position:
               461-728
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               83, 54
               

               Conread position:
               462-725
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               80, 31
               

               Conread position:
               477-713
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               21, 92
               

               Conread position:
               479-732
               

               Cow position:
               
               

               Alignm length:
               259
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               482-675
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               62, 133
               

               Conread position:
               507-732
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               512-732
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               521-722
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               536-708
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 157
               

               Conread position:
               536-723
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               5, 32
               

               Conread position:
               538-731
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               64, 137
               

               Conread position:
               538-732
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               545-704
               

               Cow position:
               
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               59, 22
               

               Conread position:
               551-732
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               567-732
               

               Cow position:
               
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               73, 93
               

               Conread position:
               569-696
               

               Cow position:
               
               

               Alignm length:
               131
               

               Alignm identity:
               103
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               35, 45
               

               Conread position:
               586-732
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               116
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               18, 38
               

               Conread position:
               605-723
               

               Cow position:
               
               

               Alignm length:
               119
               

               Alignm identity:
               95
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               625-732
               

               Cow position:
               
               

               Alignm length:
               108
               

               Alignm identity:
               88
               

               Alignm E-value:
               5e-23
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.