Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-337 |
| Cow position: | chr17:14325429-14325102 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 70 |
| Conread position: | 3-181 |
| Cow position: | chr17:4295430-4295601 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 8-209 |
| Cow position: | chr17:15371138-15371335 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 63-315 |
| Cow position: | chr17:36987552-36987306 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 215, 61 |
| Conread position: | 160-723 |
| Cow position: | chr17:4081963-4082520 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 78 |
| Conread position: | 171-725 |
| Cow position: | chr17:42264833-42265394 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 167 |
| Conread position: | 172-732 |
| Cow position: | chr17:19019490-19020049 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 49 |
| Conread position: | 178-430 |
| Cow position: | chr17:20402003-20402262 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 194-728 |
| Cow position: | chr17:18300462-18299923 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 199-730 |
| Cow position: | chr17:12670133-12669603 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 61 |
| Conread position: | 227-501 |
| Cow position: | chr17:16900187-16899909 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 132 |
| Conread position: | 230-655 |
| Cow position: | chr17:20487975-20488398 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 7 |
| Conread position: | 243-728 |
| Cow position: | chr17:3708792-3708308 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 245-726 |
| Cow position: | chr17:14308077-14307597 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 32, 161 |
| Conread position: | 246-731 |
| Cow position: | chr17:6076177-6076669 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 280-464 |
| Cow position: | chr17:152076-151895 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 284-728 |
| Cow position: | chr17:11026782-11026325 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 296-722 |
| Cow position: | chr17:1657798-1657378 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 115 |
| Conread position: | 309-724 |
| Cow position: | chr17:21354152-21354560 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 264 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 316-732 |
| Cow position: | chr17:15156912-15156491 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 93 |
| Conread position: | 328-691 |
| Cow position: | chr17:15384357-15384721 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 332-731 |
| Cow position: | chr17:2092694-2092282 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 333-540 |
| Cow position: | chr17:6001333-6001129 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 348-728 |
| Cow position: | chr17:20811802-20811418 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 352-731 |
| Cow position: | chr17:38945753-38946129 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 385-728 |
| Cow position: | chr17:2174016-2174350 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 386-732 |
| Cow position: | chr17:14040897-14040556 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 97 |
| Conread position: | 391-732 |
| Cow position: | chr17:250295-250642 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 392-544 |
| Cow position: | chr17:27345936-27346088 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-596 |
| Cow position: | chr17:25737801-25738006 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 392-683 |
| Cow position: | chr17:19269228-19268935 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 392-732 |
| Cow position: | chr17:2579753-2580097 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr17:3642698-3642354 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 392-732 |
| Cow position: | chr17:6068700-6069031 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 9 |
| Conread position: | 392-732 |
| Cow position: | chr17:6259982-6260324 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr17:11087586-11087248 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr17:14894291-14894635 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr17:15850535-15850879 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr17:16857395-16857044 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr17:18103547-18103213 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 392-732 |
| Cow position: | chr17:40804955-40805291 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 394-732 |
| Cow position: | chr17:15143232-15142892 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 398-531 |
| Cow position: | chr17:35592360-35592494 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 398-537 |
| Cow position: | chr17:602295-602156 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 398-559 |
| Cow position: | chr17:13856626-13856465 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 143, 18 |
| Conread position: | 399-537 |
| Cow position: | chr17:20073100-20072962 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 399-731 |
| Cow position: | chr17:20087599-20087268 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 35 |
| Conread position: | 401-530 |
| Cow position: | chr17:22429340-22429210 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 401-530 |
| Cow position: | chr17:23856886-23856757 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 401-537 |
| Cow position: | chr17:18185387-18185251 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 401-732 |
| Cow position: | chr17:4060242-4060580 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 401-732 |
| Cow position: | chr17:22132376-22132711 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 401-732 |
| Cow position: | chr17:24029852-24029528 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 403-732 |
| Cow position: | chr17:1382673-1382344 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 280 |
| Conread position: | 409-596 |
| Cow position: | chr17:24634102-24634291 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 410-601 |
| Cow position: | chr17:2248436-2248242 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 411-591 |
| Cow position: | chr17:181513-181692 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 131, 102 |
| Conread position: | 411-704 |
| Cow position: | chr17:1880248-1880537 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 30 |
| Conread position: | 411-731 |
| Cow position: | chr17:8209256-8209581 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 411-732 |
| Cow position: | chr17:6119858-6120186 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 111 |
| Conread position: | 411-732 |
| Cow position: | chr17:23324304-23323979 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 422-677 |
| Cow position: | chr17:43952402-43952143 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 422-730 |
| Cow position: | chr17:228147-227835 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 422-732 |
| Cow position: | chr17:2262263-2262578 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 422-732 |
| Cow position: | chr17:15435952-15436266 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 422-732 |
| Cow position: | chr17:31767878-31767564 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 422-732 |
| Cow position: | chr17:34156289-34156603 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 198 |
| Conread position: | 429-724 |
| Cow position: | chr17:24782335-24782632 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 149 |
| Conread position: | 429-732 |
| Cow position: | chr17:14216858-14216558 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 171 |
| Conread position: | 429-732 |
| Cow position: | chr17:20665558-20665250 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 447-697 |
| Cow position: | chr17:2030332-2030591 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 103, 59 |
| Conread position: | 448-732 |
| Cow position: | chr17:151684-151396 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 450-732 |
| Cow position: | chr17:5226812-5227097 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 195 |
| Conread position: | 452-725 |
| Cow position: | chr17:38873813-38874088 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 85, 209 |
| Conread position: | 454-732 |
| Cow position: | chr17:15324021-15324303 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 462-732 |
| Cow position: | chr17:13695785-13695517 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 143, 114 |
| Conread position: | 463-732 |
| Cow position: | chr17:11376582-11376309 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 464-703 |
| Cow position: | chr17:20183642-20183876 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 473-647 |
| Cow position: | chr17:14051898-14051720 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 484-696 |
| Cow position: | chr17:18194054-18194271 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 517-719 |
| Cow position: | chr17:8491672-8491465 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 526-720 |
| Cow position: | chr17:3205447-3205253 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 553-732 |
| Cow position: | chr17:9081146-9080965 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 586-722 |
| Cow position: | chr17:2247741-2247603 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 603-732 |
| Cow position: | chr17:43988846-43988975 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.