Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-271 |
| Cow position: | chr18:56462611-56462352 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 107, 54 |
| Conread position: | 1-477 |
| Cow position: | chr18:29237100-29237566 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 1-732 |
| Cow position: | chr18:54171572-54170849 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 542 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 60 |
| Conread position: | 127-408 |
| Cow position: | chr18:16842841-16842567 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 160-429 |
| Cow position: | chr18:54270113-54270374 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 265-450 |
| Cow position: | chr18:51275709-51275529 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 10 |
| Conread position: | 265-697 |
| Cow position: | chr18:8168921-8169355 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 169 |
| Conread position: | 277-722 |
| Cow position: | chr18:46868331-46867888 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 284-537 |
| Cow position: | chr18:23709460-23709709 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 65 |
| Conread position: | 285-654 |
| Cow position: | chr18:46855563-46855193 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 47, 121 |
| Conread position: | 290-652 |
| Cow position: | chr18:16263631-16263280 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 250, 26 |
| Conread position: | 293-728 |
| Cow position: | chr18:208364-207947 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 300-728 |
| Cow position: | chr18:51238546-51238980 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 277 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 8, 116 |
| Conread position: | 301-535 |
| Cow position: | chr18:36257186-36256955 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 316-732 |
| Cow position: | chr18:29765237-29765662 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 390-725 |
| Cow position: | chr18:33750358-33750694 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 391-544 |
| Cow position: | chr18:16534323-16534476 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 392-722 |
| Cow position: | chr18:14130735-14131070 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 392-731 |
| Cow position: | chr18:36508678-36509021 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr18:14416321-14416668 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr18:16176272-16175933 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 392-732 |
| Cow position: | chr18:25351096-25351440 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 6 |
| Conread position: | 392-732 |
| Cow position: | chr18:27837971-27837629 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr18:28973557-28973200 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr18:32652548-32652900 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr18:37505409-37505747 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 392-732 |
| Cow position: | chr18:40478728-40479072 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr18:52651265-52651600 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 393-639 |
| Cow position: | chr18:32260165-32259921 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 24 |
| Conread position: | 393-696 |
| Cow position: | chr18:54003867-54004163 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 398-719 |
| Cow position: | chr18:33269178-33269501 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 401-529 |
| Cow position: | chr18:53786193-53786322 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 401-530 |
| Cow position: | chr18:54044367-54044238 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-536 |
| Cow position: | chr18:17992065-17991931 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-536 |
| Cow position: | chr18:47719228-47719093 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 401-540 |
| Cow position: | chr18:24700757-24700619 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 401-540 |
| Cow position: | chr18:43146570-43146432 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 122, 15 |
| Conread position: | 401-732 |
| Cow position: | chr18:23798003-23798331 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 401-732 |
| Cow position: | chr18:41840469-41840125 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 37 |
| Conread position: | 401-732 |
| Cow position: | chr18:54023769-54023452 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 402-732 |
| Cow position: | chr18:27987420-27987755 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 36 |
| Conread position: | 403-713 |
| Cow position: | chr18:33336220-33336534 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 12 |
| Conread position: | 404-544 |
| Cow position: | chr18:51258330-51258466 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 406-687 |
| Cow position: | chr18:22385050-22385340 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 406-732 |
| Cow position: | chr18:51481195-51481523 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 30 |
| Conread position: | 409-731 |
| Cow position: | chr18:33953219-33952895 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 148 |
| Conread position: | 409-732 |
| Cow position: | chr18:22602843-22603168 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 411-732 |
| Cow position: | chr18:51342044-51342369 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 422-732 |
| Cow position: | chr18:19352751-19353054 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 47 |
| Conread position: | 422-732 |
| Cow position: | chr18:24040363-24040042 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 423-530 |
| Cow position: | chr18:51310956-51311063 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 423-531 |
| Cow position: | chr18:2019307-2019199 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-729 |
| Cow position: | chr18:51462703-51462400 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 429-732 |
| Cow position: | chr18:11274730-11274423 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 429-732 |
| Cow position: | chr18:55088548-55088237 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 439-537 |
| Cow position: | chr18:35335906-35336004 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 439-718 |
| Cow position: | chr18:16304127-16304413 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 440-732 |
| Cow position: | chr18:16088539-16088830 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 262 |
| Conread position: | 441-731 |
| Cow position: | chr18:16721935-16721638 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 447-732 |
| Cow position: | chr18:51660741-51661028 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 179 |
| Conread position: | 452-728 |
| Cow position: | chr18:54270913-54271184 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 89, 192 |
| Conread position: | 464-568 |
| Cow position: | chr18:49671209-49671314 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 34 |
| Conread position: | 482-728 |
| Cow position: | chr18:16079107-16079350 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 512-686 |
| Cow position: | chr18:37158514-37158343 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 523-722 |
| Cow position: | chr18:36256748-36256549 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 70 |
| Conread position: | 555-731 |
| Cow position: | chr18:51275530-51275350 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
Show alignments to all cow chromosomes.