Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-541 |
| Cow position: | chr19:263099-263646 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 126 |
| Conread position: | 1-732 |
| Cow position: | chr19:27052552-27051827 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 23 |
| Conread position: | 2-496 |
| Cow position: | chr19:42982-43469 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 85 |
| Conread position: | 3-731 |
| Cow position: | chr19:137058-136325 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 55 |
| Conread position: | 5-732 |
| Cow position: | chr19:163130-162419 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 57 |
| Conread position: | 7-693 |
| Cow position: | chr19:352689-351999 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 65 |
| Conread position: | 37-414 |
| Cow position: | chr19:44532444-44532827 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 77-722 |
| Cow position: | chr19:32203195-32203825 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 136-728 |
| Cow position: | chr19:3138021-3138625 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 312 |
| Conread position: | 154-702 |
| Cow position: | chr19:32182970-32182425 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 227-498 |
| Cow position: | chr19:17019011-17019287 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 181 |
| Conread position: | 246-530 |
| Cow position: | chr19:35377363-35377649 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 107, 276 |
| Conread position: | 278-500 |
| Cow position: | chr19:39689259-39689481 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 158, 57 |
| Conread position: | 278-529 |
| Cow position: | chr19:32222786-32222533 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 278-730 |
| Cow position: | chr19:39669273-39668823 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 121 |
| Conread position: | 296-731 |
| Cow position: | chr19:189692-190107 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 51, 91 |
| Conread position: | 307-662 |
| Cow position: | chr19:14213737-14213385 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 15, 97 |
| Conread position: | 328-500 |
| Cow position: | chr19:3173756-3173916 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 329-732 |
| Cow position: | chr19:35980437-35980832 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 84 |
| Conread position: | 352-719 |
| Cow position: | chr19:10956910-10956551 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 172, 56 |
| Conread position: | 381-732 |
| Cow position: | chr19:75908-75562 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 24 |
| Conread position: | 383-537 |
| Cow position: | chr19:4532287-4532137 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 5 |
| Conread position: | 390-725 |
| Cow position: | chr19:33444083-33443739 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 69 |
| Conread position: | 390-730 |
| Cow position: | chr19:893260-892917 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 390-732 |
| Cow position: | chr19:439092-438748 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 48 |
| Conread position: | 392-732 |
| Cow position: | chr19:5729179-5729523 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr19:7488663-7489002 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr19:33873776-33874113 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr19:33941960-33942292 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 50 |
| Conread position: | 392-732 |
| Cow position: | chr19:39185196-39184851 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr19:39390858-39391198 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 393-659 |
| Cow position: | chr19:39698791-39699062 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 393-729 |
| Cow position: | chr19:28581310-28580974 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 394-544 |
| Cow position: | chr19:28376837-28376991 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 394-732 |
| Cow position: | chr19:341572-341909 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 33 |
| Conread position: | 398-537 |
| Cow position: | chr19:29209952-29210097 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 399-732 |
| Cow position: | chr19:40887380-40887056 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 401-529 |
| Cow position: | chr19:32665882-32666010 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 401-556 |
| Cow position: | chr19:348436-348282 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 401-556 |
| Cow position: | chr19:417020-417174 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-703 |
| Cow position: | chr19:24751366-24751668 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 401-724 |
| Cow position: | chr19:40852078-40851754 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 14 |
| Conread position: | 401-732 |
| Cow position: | chr19:172570-172896 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 401-732 |
| Cow position: | chr19:204316-204647 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 401-732 |
| Cow position: | chr19:2274025-2273691 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 401-732 |
| Cow position: | chr19:40817343-40817039 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 136, 14 |
| Conread position: | 403-730 |
| Cow position: | chr19:35385390-35385063 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 20, 80 |
| Conread position: | 406-732 |
| Cow position: | chr19:772954-773282 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 26 |
| Conread position: | 409-610 |
| Cow position: | chr19:5208532-5208737 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 411-591 |
| Cow position: | chr19:687425-687607 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 130, 80 |
| Conread position: | 411-732 |
| Cow position: | chr19:28593626-28593949 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 215 |
| Conread position: | 411-732 |
| Cow position: | chr19:52151468-52151143 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 422-640 |
| Cow position: | chr19:38268-38491 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 422-732 |
| Cow position: | chr19:7342444-7342754 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 47 |
| Conread position: | 422-732 |
| Cow position: | chr19:32211700-32211386 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 198 |
| Conread position: | 422-732 |
| Cow position: | chr19:43144089-43144400 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 93 |
| Conread position: | 443-732 |
| Cow position: | chr19:4386012-4386314 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 168 |
| Conread position: | 461-724 |
| Cow position: | chr19:27037130-27036877 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 463-731 |
| Cow position: | chr19:20105125-20105399 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 219 |
| Conread position: | 464-732 |
| Cow position: | chr19:168185-167913 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 480-732 |
| Cow position: | chr19:12773551-12773805 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 484-732 |
| Cow position: | chr19:5901059-5900807 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 592-719 |
| Cow position: | chr19:50685241-50685366 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 592-731 |
| Cow position: | chr19:28406155-28406020 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 630-728 |
| Cow position: | chr19:38793-38891 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 59 |
Show alignments to all cow chromosomes.