Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-541
Cow position:
Alignm length: 564
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 126

Conread position: 1-732
Cow position:
Alignm length: 750
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 23

Conread position: 2-496
Cow position:
Alignm length: 500
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 85

Conread position: 3-731
Cow position:
Alignm length: 751
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 55

Conread position: 5-732
Cow position:
Alignm length: 734
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 57

Conread position: 7-693
Cow position:
Alignm length: 704
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 65

Conread position: 37-414
Cow position:
Alignm length: 395
Alignm identity: 276
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 62, 32

Conread position: 77-722
Cow position:
Alignm length: 662
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 48

Conread position: 136-728
Cow position:
Alignm length: 608
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 312

Conread position: 154-702
Cow position:
Alignm length: 558
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 9

Conread position: 227-498
Cow position:
Alignm length: 279
Alignm identity: 194
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 56, 181

Conread position: 246-530
Cow position:
Alignm length: 288
Alignm identity: 202
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 107, 276

Conread position: 278-500
Cow position:
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 158, 57

Conread position: 278-529
Cow position:
Alignm length: 256
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 103

Conread position: 278-730
Cow position:
Alignm length: 460
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 121

Conread position: 296-731
Cow position:
Alignm length: 442
Alignm identity: 288
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 51, 91

Conread position: 307-662
Cow position:
Alignm length: 363
Alignm identity: 244
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 15, 97

Conread position: 328-500
Cow position:
Alignm length: 173
Alignm identity: 130
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 24, 0

Conread position: 329-732
Cow position:
Alignm length: 405
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 84

Conread position: 352-719
Cow position:
Alignm length: 373
Alignm identity: 240
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 172, 56

Conread position: 381-732
Cow position:
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 24

Conread position: 383-537
Cow position:
Alignm length: 156
Alignm identity: 121
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 41, 5

Conread position: 390-725
Cow position:
Alignm length: 348
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 69

Conread position: 390-730
Cow position:
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 26

Conread position: 390-732
Cow position:
Alignm length: 346
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 344
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 50

Conread position: 392-732
Cow position:
Alignm length: 347
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 393-659
Cow position:
Alignm length: 276
Alignm identity: 185
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 12, 25

Conread position: 393-729
Cow position:
Alignm length: 342
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 394-544
Cow position:
Alignm length: 155
Alignm identity: 124
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 23, 0

Conread position: 394-732
Cow position:
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 33

Conread position: 398-537
Cow position:
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 26, 17

Conread position: 399-732
Cow position:
Alignm length: 340
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 66

Conread position: 401-529
Cow position:
Alignm length: 130
Alignm identity: 105
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 28, 14

Conread position: 401-556
Cow position:
Alignm length: 156
Alignm identity: 119
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 147, 0

Conread position: 401-556
Cow position:
Alignm length: 157
Alignm identity: 126
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 23, 14

Conread position: 401-703
Cow position:
Alignm length: 307
Alignm identity: 200
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 43, 56

Conread position: 401-724
Cow position:
Alignm length: 326
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 14

Conread position: 401-732
Cow position:
Alignm length: 334
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 14

Conread position: 401-732
Cow position:
Alignm length: 337
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 17

Conread position: 401-732
Cow position:
Alignm length: 334
Alignm identity: 245
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 136, 14

Conread position: 403-730
Cow position:
Alignm length: 336
Alignm identity: 223
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 20, 80

Conread position: 406-732
Cow position:
Alignm length: 331
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 26

Conread position: 409-610
Cow position:
Alignm length: 206
Alignm identity: 156
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 132, 0

Conread position: 411-591
Cow position:
Alignm length: 184
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 130, 80

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 215

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 422-640
Cow position:
Alignm length: 224
Alignm identity: 167
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 47

Conread position: 422-732
Cow position:
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 198

Conread position: 422-732
Cow position:
Alignm length: 314
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 93

Conread position: 443-732
Cow position:
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 168

Conread position: 461-724
Cow position:
Alignm length: 266
Alignm identity: 182
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 80, 37

Conread position: 463-731
Cow position:
Alignm length: 277
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 219

Conread position: 464-732
Cow position:
Alignm length: 273
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 480-732
Cow position:
Alignm length: 255
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 484-732
Cow position:
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 592-719
Cow position:
Alignm length: 128
Alignm identity: 105
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 592-731
Cow position:
Alignm length: 140
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 630-728
Cow position:
Alignm length: 100
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 59

Show alignments to all cow chromosomes.