Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-716 |
| Cow position: | chr20:18315359-18314696 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 135-732 |
| Cow position: | chr20:8215554-8216167 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 148 |
| Conread position: | 192-582 |
| Cow position: | chr20:4653633-4654020 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 227-425 |
| Cow position: | chr20:22207087-22207285 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 100, 35 |
| Conread position: | 233-703 |
| Cow position: | chr20:8993070-8992600 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 16 |
| Conread position: | 245-732 |
| Cow position: | chr20:35104940-35105408 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 248-689 |
| Cow position: | chr20:19051474-19051033 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 296 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 176 |
| Conread position: | 253-731 |
| Cow position: | chr20:18324988-18324537 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 280, 16 |
| Conread position: | 278-525 |
| Cow position: | chr20:3893306-3893555 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 284-732 |
| Cow position: | chr20:20754273-20753843 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 294-730 |
| Cow position: | chr20:2790692-2790259 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 39 |
| Conread position: | 296-723 |
| Cow position: | chr20:31377979-31377566 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 301-688 |
| Cow position: | chr20:18963587-18963192 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 38, 132 |
| Conread position: | 307-720 |
| Cow position: | chr20:8834984-8834554 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 308-701 |
| Cow position: | chr20:7085463-7085065 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 265 |
| Conread position: | 315-693 |
| Cow position: | chr20:37580324-37580684 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 224, 21 |
| Conread position: | 315-732 |
| Cow position: | chr20:10855100-10854701 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 21 |
| Conread position: | 321-731 |
| Cow position: | chr20:24371563-24371152 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 136 |
| Conread position: | 322-731 |
| Cow position: | chr20:10840467-10840063 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 62 |
| Conread position: | 348-704 |
| Cow position: | chr20:20391319-20390971 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 368-728 |
| Cow position: | chr20:3679290-3678937 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 373-699 |
| Cow position: | chr20:28302860-28303198 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 373-718 |
| Cow position: | chr20:17704588-17704231 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 159 |
| Conread position: | 374-709 |
| Cow position: | chr20:13791641-13791971 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 377-732 |
| Cow position: | chr20:35124788-35125147 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 54 |
| Conread position: | 387-732 |
| Cow position: | chr20:13679741-13679392 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 9 |
| Conread position: | 392-537 |
| Cow position: | chr20:9104815-9104670 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-687 |
| Cow position: | chr20:21914634-21914933 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 47 |
| Conread position: | 392-731 |
| Cow position: | chr20:15292317-15292651 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-731 |
| Cow position: | chr20:30684627-30684971 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr20:5535244-5535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr20:12438454-12438113 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 392-732 |
| Cow position: | chr20:15097570-15097227 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr20:23799192-23799535 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr20:25850684-25850346 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr20:27869504-27869851 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr20:28161077-28161416 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr20:28565289-28564943 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 392-732 |
| Cow position: | chr20:29948805-29949150 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 401-530 |
| Cow position: | chr20:3684171-3684040 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-535 |
| Cow position: | chr20:3033378-3033513 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 401-537 |
| Cow position: | chr20:3251818-3251683 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-558 |
| Cow position: | chr20:10845805-10845647 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 401-693 |
| Cow position: | chr20:3271021-3271310 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 14 |
| Conread position: | 401-732 |
| Cow position: | chr20:8003909-8003578 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 401-732 |
| Cow position: | chr20:13763221-13763555 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 401-732 |
| Cow position: | chr20:21393910-21394244 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 402-596 |
| Cow position: | chr20:42076743-42076552 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 402-730 |
| Cow position: | chr20:23469348-23469018 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 37 |
| Conread position: | 402-731 |
| Cow position: | chr20:16179503-16179167 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 403-537 |
| Cow position: | chr20:15947062-15946928 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 411-702 |
| Cow position: | chr20:823086-823381 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 411-719 |
| Cow position: | chr20:19438258-19438561 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 186 |
| Conread position: | 412-703 |
| Cow position: | chr20:22716998-22716713 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 412-732 |
| Cow position: | chr20:38350997-38351320 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 422-732 |
| Cow position: | chr20:25961433-25961747 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 446-719 |
| Cow position: | chr20:42905575-42905841 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 447-604 |
| Cow position: | chr20:19352895-19353049 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 94, 15 |
| Conread position: | 453-683 |
| Cow position: | chr20:7115119-7114885 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 473-695 |
| Cow position: | chr20:22697656-22697880 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 71, 116 |
| Conread position: | 483-692 |
| Cow position: | chr20:38624405-38624612 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 161 |
| Conread position: | 540-732 |
| Cow position: | chr20:12568975-12569169 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 540-732 |
| Cow position: | chr20:15065724-15065914 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 159 |
| Conread position: | 546-732 |
| Cow position: | chr20:8974354-8974168 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 58, 142 |
| Conread position: | 547-732 |
| Cow position: | chr20:14870486-14870301 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 586-721 |
| Cow position: | chr20:13434086-13433949 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 588-697 |
| Cow position: | chr20:20931047-20931159 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 603-689 |
| Cow position: | chr20:24616339-24616253 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 75 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 604-731 |
| Cow position: | chr20:17661557-17661430 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.