Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-716
Cow position:
Alignm length: 724
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 60

Conread position: 135-732
Cow position:
Alignm length: 618
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 148

Conread position: 192-582
Cow position:
Alignm length: 401
Alignm identity: 257
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 66, 29

Conread position: 227-425
Cow position:
Alignm length: 201
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 35

Conread position: 233-703
Cow position:
Alignm length: 481
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 16

Conread position: 245-732
Cow position:
Alignm length: 493
Alignm identity: 326
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 17, 71

Conread position: 248-689
Cow position:
Alignm length: 457
Alignm identity: 296
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 38, 176

Conread position: 253-731
Cow position:
Alignm length: 482
Alignm identity: 320
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 280, 16

Conread position: 278-525
Cow position:
Alignm length: 253
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 65

Conread position: 284-732
Cow position:
Alignm length: 450
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 29

Conread position: 294-730
Cow position:
Alignm length: 439
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 310, 39

Conread position: 296-723
Cow position:
Alignm length: 433
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 59

Conread position: 301-688
Cow position:
Alignm length: 401
Alignm identity: 265
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 132

Conread position: 307-720
Cow position:
Alignm length: 434
Alignm identity: 281
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 26, 133

Conread position: 308-701
Cow position:
Alignm length: 409
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 265

Conread position: 315-693
Cow position:
Alignm length: 384
Alignm identity: 265
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 224, 21

Conread position: 315-732
Cow position:
Alignm length: 420
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 21

Conread position: 321-731
Cow position:
Alignm length: 419
Alignm identity: 269
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 136

Conread position: 322-731
Cow position:
Alignm length: 412
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 62

Conread position: 348-704
Cow position:
Alignm length: 362
Alignm identity: 229
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 76, 14

Conread position: 368-728
Cow position:
Alignm length: 370
Alignm identity: 247
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 20, 15

Conread position: 373-699
Cow position:
Alignm length: 342
Alignm identity: 220
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 55

Conread position: 373-718
Cow position:
Alignm length: 359
Alignm identity: 227
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 14, 159

Conread position: 374-709
Cow position:
Alignm length: 340
Alignm identity: 216
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 92, 16

Conread position: 377-732
Cow position:
Alignm length: 361
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 54

Conread position: 387-732
Cow position:
Alignm length: 353
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 9

Conread position: 392-537
Cow position:
Alignm length: 148
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 8, 24

Conread position: 392-687
Cow position:
Alignm length: 301
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 47

Conread position: 392-731
Cow position:
Alignm length: 345
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-731
Cow position:
Alignm length: 346
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 45

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 350
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 349
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 41

Conread position: 392-732
Cow position:
Alignm length: 349
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 401-530
Cow position:
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 14

Conread position: 401-535
Cow position:
Alignm length: 137
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 15

Conread position: 401-537
Cow position:
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 23, 14

Conread position: 401-558
Cow position:
Alignm length: 160
Alignm identity: 131
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 140, 14

Conread position: 401-693
Cow position:
Alignm length: 297
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 14

Conread position: 401-732
Cow position:
Alignm length: 335
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 401-732
Cow position:
Alignm length: 337
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 14

Conread position: 402-596
Cow position:
Alignm length: 195
Alignm identity: 147
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 20, 0

Conread position: 402-730
Cow position:
Alignm length: 333
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 37

Conread position: 402-731
Cow position:
Alignm length: 339
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 13

Conread position: 403-537
Cow position:
Alignm length: 136
Alignm identity: 111
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 44, 12

Conread position: 411-702
Cow position:
Alignm length: 296
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-719
Cow position:
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 186

Conread position: 412-703
Cow position:
Alignm length: 295
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 7

Conread position: 412-732
Cow position:
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 446-719
Cow position:
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 447-604
Cow position:
Alignm length: 160
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 94, 15

Conread position: 453-683
Cow position:
Alignm length: 235
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 473-695
Cow position:
Alignm length: 227
Alignm identity: 171
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 71, 116

Conread position: 483-692
Cow position:
Alignm length: 213
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 68, 161

Conread position: 540-732
Cow position:
Alignm length: 195
Alignm identity: 158
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 540-732
Cow position:
Alignm length: 196
Alignm identity: 150
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 64, 159

Conread position: 546-732
Cow position:
Alignm length: 189
Alignm identity: 144
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 58, 142

Conread position: 547-732
Cow position:
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 128

Conread position: 586-721
Cow position:
Alignm length: 138
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 588-697
Cow position:
Alignm length: 113
Alignm identity: 97
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 603-689
Cow position:
Alignm length: 87
Alignm identity: 75
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 604-731
Cow position:
Alignm length: 128
Alignm identity: 110
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.