Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-291 |
| Cow position: | chr21:30226391-30226666 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-464 |
| Cow position: | chr21:4183890-4184331 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 19 |
| Conread position: | 1-470 |
| Cow position: | chr21:9870118-9870561 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 67 |
| Conread position: | 1-691 |
| Cow position: | chr21:9891975-9892655 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 1-720 |
| Cow position: | chr21:2541041-2540337 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 45 |
| Conread position: | 1-731 |
| Cow position: | chr21:29141-29841 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 67 |
| Conread position: | 1-732 |
| Cow position: | chr21:359405-360125 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 549 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 67 |
| Conread position: | 5-364 |
| Cow position: | chr21:23812251-23812608 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 197, 51 |
| Conread position: | 128-731 |
| Cow position: | chr21:21926161-21925554 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 132-725 |
| Cow position: | chr21:21517716-21518277 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 158-426 |
| Cow position: | chr21:21947048-21946791 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 189, 26 |
| Conread position: | 192-731 |
| Cow position: | chr21:2710744-2711257 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 262-732 |
| Cow position: | chr21:23861613-23862088 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 147 |
| Conread position: | 264-558 |
| Cow position: | chr21:6109860-6110150 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 278-732 |
| Cow position: | chr21:21914998-21915451 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 279-709 |
| Cow position: | chr21:1689920-1689478 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 109, 69 |
| Conread position: | 290-697 |
| Cow position: | chr21:23602872-23603273 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 295-520 |
| Cow position: | chr21:37292906-37293123 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 108, 92 |
| Conread position: | 298-678 |
| Cow position: | chr21:217248-217613 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 301-638 |
| Cow position: | chr21:34053989-34053660 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 34, 140 |
| Conread position: | 301-673 |
| Cow position: | chr21:12803739-12803347 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 107, 44 |
| Conread position: | 301-732 |
| Cow position: | chr21:25975598-25976041 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 265 |
| Conread position: | 308-732 |
| Cow position: | chr21:27565737-27566172 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 27 |
| Conread position: | 316-732 |
| Cow position: | chr21:11505935-11506358 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 335-659 |
| Cow position: | chr21:20744131-20743816 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 202, 48 |
| Conread position: | 346-728 |
| Cow position: | chr21:4093881-4094262 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 347-730 |
| Cow position: | chr21:23812557-23812938 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 111 |
| Conread position: | 380-728 |
| Cow position: | chr21:1074486-1074833 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 8, 208 |
| Conread position: | 390-556 |
| Cow position: | chr21:35596850-35597015 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 391-732 |
| Cow position: | chr21:4077262-4077597 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 25 |
| Conread position: | 392-489 |
| Cow position: | chr21:1191589-1191685 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 392-544 |
| Cow position: | chr21:34293441-34293594 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-725 |
| Cow position: | chr21:3779192-3779531 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-731 |
| Cow position: | chr21:31559230-31558896 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 46 |
| Conread position: | 392-732 |
| Cow position: | chr21:2883323-2882977 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr21:10567094-10567436 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr21:10850503-10850841 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr21:27282811-27283155 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr21:30562228-30562567 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr21:30599500-30599161 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr21:33251931-33252269 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 392-732 |
| Cow position: | chr21:35144182-35144523 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr21:40271255-40270911 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-732 |
| Cow position: | chr21:48116527-48116867 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 393-732 |
| Cow position: | chr21:2416641-2416977 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 22 |
| Conread position: | 394-732 |
| Cow position: | chr21:2476118-2475778 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 10 |
| Conread position: | 398-731 |
| Cow position: | chr21:2502323-2502632 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 399-554 |
| Cow position: | chr21:2716284-2716132 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 401-530 |
| Cow position: | chr21:13123570-13123445 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-732 |
| Cow position: | chr21:146358-146689 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 402-732 |
| Cow position: | chr21:7267101-7266768 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 403-732 |
| Cow position: | chr21:11453227-11452895 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 403-732 |
| Cow position: | chr21:37046049-37046383 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 406-731 |
| Cow position: | chr21:28735669-28735998 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 216 |
| Conread position: | 407-666 |
| Cow position: | chr21:38911528-38911792 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 409-689 |
| Cow position: | chr21:26650477-26650761 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 409-732 |
| Cow position: | chr21:11406560-11406233 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 409-732 |
| Cow position: | chr21:13313209-13313531 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 18 |
| Conread position: | 410-638 |
| Cow position: | chr21:46916024-46916251 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 410-731 |
| Cow position: | chr21:4589547-4589228 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 36 |
| Conread position: | 410-732 |
| Cow position: | chr21:467333-467640 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 125 |
| Conread position: | 410-732 |
| Cow position: | chr21:4091085-4091411 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 411-534 |
| Cow position: | chr21:26638027-26637904 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-732 |
| Cow position: | chr21:37371683-37372008 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 411-732 |
| Cow position: | chr21:39425501-39425824 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 163 |
| Conread position: | 422-631 |
| Cow position: | chr21:6340015-6340228 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 422-732 |
| Cow position: | chr21:2511344-2511658 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 422-732 |
| Cow position: | chr21:12055552-12055238 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 453-732 |
| Cow position: | chr21:1287738-1287457 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 98 |
| Conread position: | 456-731 |
| Cow position: | chr21:6622073-6622352 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 86, 118 |
| Conread position: | 459-725 |
| Cow position: | chr21:47949552-47949816 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 110 |
| Conread position: | 464-725 |
| Cow position: | chr21:18819672-18819402 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 152 |
| Conread position: | 469-731 |
| Cow position: | chr21:27070765-27070499 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 470-731 |
| Cow position: | chr21:8271477-8271213 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 66, 191 |
| Conread position: | 473-732 |
| Cow position: | chr21:47941359-47941619 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 71 |
| Conread position: | 479-732 |
| Cow position: | chr21:1192264-1192521 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 482-693 |
| Cow position: | chr21:6632206-6631999 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 106 |
| Conread position: | 493-702 |
| Cow position: | chr21:26095335-26095548 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 129 |
| Conread position: | 514-719 |
| Cow position: | chr21:20174963-20175172 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 543-731 |
| Cow position: | chr21:26637625-26637436 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 545-721 |
| Cow position: | chr21:28255777-28255963 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 563-713 |
| Cow position: | chr21:18817958-18817815 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 120, 28 |
| Conread position: | 629-732 |
| Cow position: | chr21:5840606-5840503 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 91 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.