Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-291
Cow position:
Alignm length: 291
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 0

Conread position: 1-464
Cow position:
Alignm length: 469
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 19

Conread position: 1-470
Cow position:
Alignm length: 474
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 67

Conread position: 1-691
Cow position:
Alignm length: 709
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 27

Conread position: 1-720
Cow position:
Alignm length: 728
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 45

Conread position: 1-731
Cow position:
Alignm length: 740
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 67

Conread position: 1-732
Cow position:
Alignm length: 741
Alignm identity: 549
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 67

Conread position: 5-364
Cow position:
Alignm length: 369
Alignm identity: 257
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 197, 51

Conread position: 128-731
Cow position:
Alignm length: 621
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 16

Conread position: 132-725
Cow position:
Alignm length: 602
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 158-426
Cow position:
Alignm length: 272
Alignm identity: 182
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 189, 26

Conread position: 192-731
Cow position:
Alignm length: 546
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 35

Conread position: 262-732
Cow position:
Alignm length: 481
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 147

Conread position: 264-558
Cow position:
Alignm length: 295
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 278-732
Cow position:
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 38

Conread position: 279-709
Cow position:
Alignm length: 450
Alignm identity: 290
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 109, 69

Conread position: 290-697
Cow position:
Alignm length: 415
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 103

Conread position: 295-520
Cow position:
Alignm length: 227
Alignm identity: 160
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 108, 92

Conread position: 298-678
Cow position:
Alignm length: 392
Alignm identity: 257
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 8

Conread position: 301-638
Cow position:
Alignm length: 343
Alignm identity: 229
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 34, 140

Conread position: 301-673
Cow position:
Alignm length: 397
Alignm identity: 266
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 107, 44

Conread position: 301-732
Cow position:
Alignm length: 447
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 265

Conread position: 308-732
Cow position:
Alignm length: 438
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 27

Conread position: 316-732
Cow position:
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 63

Conread position: 335-659
Cow position:
Alignm length: 331
Alignm identity: 240
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 202, 48

Conread position: 346-728
Cow position:
Alignm length: 391
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 27

Conread position: 347-730
Cow position:
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 111

Conread position: 380-728
Cow position:
Alignm length: 353
Alignm identity: 218
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 208

Conread position: 390-556
Cow position:
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 391-732
Cow position:
Alignm length: 346
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 25

Conread position: 392-489
Cow position:
Alignm length: 99
Alignm identity: 84
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 8, 41

Conread position: 392-544
Cow position:
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 8, 24

Conread position: 392-725
Cow position:
Alignm length: 341
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-731
Cow position:
Alignm length: 345
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 46

Conread position: 392-732
Cow position:
Alignm length: 348
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 347
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 345
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 393-732
Cow position:
Alignm length: 342
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 22

Conread position: 394-732
Cow position:
Alignm length: 343
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 10

Conread position: 398-731
Cow position:
Alignm length: 334
Alignm identity: 239
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 399-554
Cow position:
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 25, 16

Conread position: 401-530
Cow position:
Alignm length: 131
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 14

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 402-732
Cow position:
Alignm length: 341
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 13

Conread position: 403-732
Cow position:
Alignm length: 333
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 403-732
Cow position:
Alignm length: 335
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 406-731
Cow position:
Alignm length: 331
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 216

Conread position: 407-666
Cow position:
Alignm length: 270
Alignm identity: 187
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 14

Conread position: 409-689
Cow position:
Alignm length: 285
Alignm identity: 172
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 132, 0

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 409-732
Cow position:
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 18

Conread position: 410-638
Cow position:
Alignm length: 232
Alignm identity: 172
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 11, 23

Conread position: 410-731
Cow position:
Alignm length: 327
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 36

Conread position: 410-732
Cow position:
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 125

Conread position: 410-732
Cow position:
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 56

Conread position: 411-534
Cow position:
Alignm length: 124
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 411-732
Cow position:
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 411-732
Cow position:
Alignm length: 325
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 163

Conread position: 422-631
Cow position:
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 0

Conread position: 453-732
Cow position:
Alignm length: 283
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 98

Conread position: 456-731
Cow position:
Alignm length: 283
Alignm identity: 200
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 86, 118

Conread position: 459-725
Cow position:
Alignm length: 272
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 110

Conread position: 464-725
Cow position:
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 152

Conread position: 469-731
Cow position:
Alignm length: 267
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 470-731
Cow position:
Alignm length: 271
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 66, 191

Conread position: 473-732
Cow position:
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 71

Conread position: 479-732
Cow position:
Alignm length: 258
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 482-693
Cow position:
Alignm length: 215
Alignm identity: 149
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 106

Conread position: 493-702
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 129

Conread position: 514-719
Cow position:
Alignm length: 211
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 102

Conread position: 543-731
Cow position:
Alignm length: 191
Alignm identity: 146
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 61, 81

Conread position: 545-721
Cow position:
Alignm length: 187
Alignm identity: 143
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 59, 0

Conread position: 563-713
Cow position:
Alignm length: 152
Alignm identity: 121
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 120, 28

Conread position: 629-732
Cow position:
Alignm length: 104
Alignm identity: 91
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.