Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-175
Cow position: chr22:11031159-11031329 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 117, 68

Conread position: 1-281
Cow position: chr22:8136002-8135736 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 150, 57

Conread position: 1-486
Cow position: chr22:41419495-41419031 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 68

Conread position: 1-541
Cow position: chr22:44609791-44610297 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 61

Conread position: 1-694
Cow position: chr22:23853529-23854213 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 71

Conread position: 1-696
Cow position: chr22:3306536-3305841 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 534
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 75

Conread position: 1-718
Cow position: chr22:13917702-13918416 (view UCSC Genome Browser custom track)
Alignm length: 732
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 68

Conread position: 17-570
Cow position: chr22:1283443-1282890 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 5

Conread position: 38-719
Cow position: chr22:35907483-35906814 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 14

Conread position: 82-407
Cow position: chr22:46547846-46548156 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 218
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 22, 40

Conread position: 127-697
Cow position: chr22:11782167-11781592 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 131-675
Cow position: chr22:1322129-1322661 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 40

Conread position: 172-459
Cow position: chr22:8740404-8740132 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 214
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 106, 68

Conread position: 172-729
Cow position: chr22:6503114-6502546 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 241

Conread position: 233-556
Cow position: chr22:44475968-44476284 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 111

Conread position: 262-732
Cow position: chr22:1269667-1269201 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 75

Conread position: 267-611
Cow position: chr22:13736433-13736089 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 14

Conread position: 279-731
Cow position: chr22:1806014-1806453 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 302
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 34

Conread position: 280-723
Cow position: chr22:37132573-37133007 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 67

Conread position: 285-732
Cow position: chr22:11031902-11032343 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 102

Conread position: 295-696
Cow position: chr22:36580642-36580247 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 91

Conread position: 295-731
Cow position: chr22:15956011-15955586 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 91

Conread position: 301-731
Cow position: chr22:36552281-36551866 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 289
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 220, 82

Conread position: 309-703
Cow position: chr22:36269402-36269796 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 26

Conread position: 321-600
Cow position: chr22:8148286-8148015 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 218, 21

Conread position: 322-653
Cow position: chr22:41239258-41239603 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 12, 114

Conread position: 328-644
Cow position: chr22:13674606-13674295 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 218
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 12, 20

Conread position: 333-685
Cow position: chr22:8875800-8876162 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 19

Conread position: 339-671
Cow position: chr22:36275619-36275964 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 42, 17

Conread position: 348-732
Cow position: chr22:14208211-14207820 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 265
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 34, 16

Conread position: 386-732
Cow position: chr22:34599653-34599985 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 7

Conread position: 389-732
Cow position: chr22:44352724-44352395 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 11

Conread position: 391-536
Cow position: chr22:1860991-1861136 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 25

Conread position: 391-731
Cow position: chr22:326918-326580 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 18

Conread position: 392-530
Cow position: chr22:1319650-1319785 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 24

Conread position: 392-565
Cow position: chr22:1522264-1522438 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 8, 23

Conread position: 392-716
Cow position: chr22:36861277-36860952 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-722
Cow position: chr22:39469270-39468938 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 392-730
Cow position: chr22:44396695-44397037 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-731
Cow position: chr22:19143446-19143099 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 323

Conread position: 392-732
Cow position: chr22:560452-560112 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr22:15313699-15313360 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 49

Conread position: 392-732
Cow position: chr22:17328486-17328143 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 30

Conread position: 392-732
Cow position: chr22:18816133-18815789 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr22:31313592-31313935 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr22:31334785-31334446 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr22:34168584-34168927 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position: chr22:42991425-42991768 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 36

Conread position: 394-732
Cow position: chr22:44369376-44369037 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 10

Conread position: 399-732
Cow position: chr22:48004794-48005132 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 16

Conread position: 401-528
Cow position: chr22:46853605-46853732 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 15

Conread position: 401-536
Cow position: chr22:42771718-42771850 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 14

Conread position: 401-540
Cow position: chr22:38937820-38937675 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 14

Conread position: 401-544
Cow position: chr22:36533478-36533335 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 14

Conread position: 401-544
Cow position: chr22:39881913-39881775 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 8

Conread position: 401-582
Cow position: chr22:13773157-13773337 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 140, 15

Conread position: 401-631
Cow position: chr22:15851577-15851810 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 136, 14

Conread position: 401-725
Cow position: chr22:525430-525105 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 8

Conread position: 401-725
Cow position: chr22:44934242-44934566 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 30

Conread position: 401-732
Cow position: chr22:21589587-21589926 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 37

Conread position: 401-732
Cow position: chr22:36184019-36184346 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 8

Conread position: 401-732
Cow position: chr22:37072815-37072489 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 7

Conread position: 401-732
Cow position: chr22:46630787-46630453 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 14

Conread position: 402-544
Cow position: chr22:117579-117437 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 13

Conread position: 406-582
Cow position: chr22:44490145-44490323 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 135, 0

Conread position: 407-730
Cow position: chr22:5308368-5308690 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 219

Conread position: 407-732
Cow position: chr22:24950357-24950686 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 408-732
Cow position: chr22:12731405-12731080 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 23

Conread position: 409-707
Cow position: chr22:16814149-16814451 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 411-730
Cow position: chr22:18027544-18027868 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 411-731
Cow position: chr22:537366-537688 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 76

Conread position: 411-732
Cow position: chr22:1879058-1879382 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 105

Conread position: 411-732
Cow position: chr22:27309508-27309187 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 63

Conread position: 411-732
Cow position: chr22:35672091-35671766 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 412-732
Cow position: chr22:27284296-27284621 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 414-732
Cow position: chr22:1520740-1520427 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 155

Conread position: 421-732
Cow position: chr22:5233007-5232691 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 422-696
Cow position: chr22:46581312-46581034 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 20

Conread position: 422-732
Cow position: chr22:3278080-3277766 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 194

Conread position: 422-732
Cow position: chr22:10909557-10909245 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 99

Conread position: 429-732
Cow position: chr22:693906-694214 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 429-732
Cow position: chr22:20240559-20240254 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 79

Conread position: 432-732
Cow position: chr22:6020949-6021251 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 246

Conread position: 443-731
Cow position: chr22:8739916-8739624 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 462-619
Cow position: chr22:5932510-5932348 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 79, 0

Conread position: 469-723
Cow position: chr22:5698545-5698303 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 479-704
Cow position: chr22:8897482-8897706 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 154

Conread position: 487-732
Cow position: chr22:35942436-35942191 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 64, 30

Conread position: 506-728
Cow position: chr22:291798-291566 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 525-732
Cow position: chr22:14629796-14630007 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 19, 0

Conread position: 530-731
Cow position: chr22:8649345-8649147 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 55, 84

Conread position: 539-732
Cow position: chr22:42988957-42989152 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 151
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 542-732
Cow position: chr22:1282954-1282770 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 555-732
Cow position: chr22:44457466-44457645 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 49, 0

Conread position: 568-732
Cow position: chr22:44491457-44491623 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 577-731
Cow position: chr22:28659870-28659720 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 592-703
Cow position: chr22:11640173-11640062 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.