Cow genome map


           Conread name:
           Ss1.1-rcbl0_018973.5
        

               Conread position:
               1-175
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               117, 68
               

               Conread position:
               1-281
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               150, 57
               

               Conread position:
               1-486
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 68
               

               Conread position:
               1-541
               

               Cow position:
               
               

               Alignm length:
               548
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 61
               

               Conread position:
               1-694
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 71
               

               Conread position:
               1-696
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               534
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 75
               

               Conread position:
               1-718
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               535
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 68
               

               Conread position:
               17-570
               

               Cow position:
               
               

               Alignm length:
               560
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 5
               

               Conread position:
               38-719
               

               Cow position:
               
               

               Alignm length:
               693
               

               Alignm identity:
               509
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               82-407
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               22, 40
               

               Conread position:
               127-697
               

               Cow position:
               
               

               Alignm length:
               584
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 17
               

               Conread position:
               131-675
               

               Cow position:
               
               

               Alignm length:
               551
               

               Alignm identity:
               421
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 40
               

               Conread position:
               172-459
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               106, 68
               

               Conread position:
               172-729
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               423
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 241
               

               Conread position:
               233-556
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               53, 111
               

               Conread position:
               262-732
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 75
               

               Conread position:
               267-611
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 14
               

               Conread position:
               279-731
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               47, 34
               

               Conread position:
               280-723
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               136, 67
               

               Conread position:
               285-732
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 102
               

               Conread position:
               295-696
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 91
               

               Conread position:
               295-731
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 91
               

               Conread position:
               301-731
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               289
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               220, 82
               

               Conread position:
               309-703
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 26
               

               Conread position:
               321-600
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               218, 21
               

               Conread position:
               322-653
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               12, 114
               

               Conread position:
               328-644
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               333-685
               

               Cow position:
               
               

               Alignm length:
               374
               

               Alignm identity:
               252
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               85, 19
               

               Conread position:
               339-671
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               42, 17
               

               Conread position:
               348-732
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               265
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               34, 16
               

               Conread position:
               386-732
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 7
               

               Conread position:
               389-732
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 11
               

               Conread position:
               391-536
               

               Cow position:
               
               

               Alignm length:
               148
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               9, 25
               

               Conread position:
               391-731
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 18
               

               Conread position:
               392-530
               

               Cow position:
               
               

               Alignm length:
               140
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               10, 24
               

               Conread position:
               392-565
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               8, 23
               

               Conread position:
               392-716
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-722
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 48
               

               Conread position:
               392-730
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-731
               

               Cow position:
               
               

               Alignm length:
               351
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 323
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 49
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 30
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 47
               

               Conread position:
               392-732
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 36
               

               Conread position:
               394-732
               

               Cow position:
               
               

               Alignm length:
               343
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 10
               

               Conread position:
               399-732
               

               Cow position:
               
               

               Alignm length:
               342
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               140, 16
               

               Conread position:
               401-528
               

               Cow position:
               
               

               Alignm length:
               129
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               118, 15
               

               Conread position:
               401-536
               

               Cow position:
               
               

               Alignm length:
               137
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               28, 14
               

               Conread position:
               401-540
               

               Cow position:
               
               

               Alignm length:
               147
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               23, 14
               

               Conread position:
               401-544
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               23, 14
               

               Conread position:
               401-544
               

               Cow position:
               
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               23, 8
               

               Conread position:
               401-582
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               140, 15
               

               Conread position:
               401-631
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               136, 14
               

               Conread position:
               401-725
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 8
               

               Conread position:
               401-725
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 30
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 37
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 8
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               401-732
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               402-544
               

               Cow position:
               
               

               Alignm length:
               144
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               22, 13
               

               Conread position:
               406-582
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               407-730
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 219
               

               Conread position:
               407-732
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               408-732
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 23
               

               Conread position:
               409-707
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 0
               

               Conread position:
               411-730
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               411-731
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 76
               

               Conread position:
               411-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 105
               

               Conread position:
               411-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 63
               

               Conread position:
               411-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 0
               

               Conread position:
               412-732
               

               Cow position:
               
               

               Alignm length:
               326
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               414-732
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 155
               

               Conread position:
               421-732
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               422-696
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 20
               

               Conread position:
               422-732
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 194
               

               Conread position:
               422-732
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 99
               

               Conread position:
               429-732
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               429-732
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 79
               

               Conread position:
               432-732
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 246
               

               Conread position:
               443-731
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               462-619
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               469-723
               

               Cow position:
               
               

               Alignm length:
               255
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               479-704
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               60, 154
               

               Conread position:
               487-732
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               506-728
               

               Cow position:
               
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               525-732
               

               Cow position:
               
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               530-731
               

               Cow position:
               
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               55, 84
               

               Conread position:
               539-732
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               542-732
               

               Cow position:
               
               

               Alignm length:
               191
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               555-732
               

               Cow position:
               
               

               Alignm length:
               180
               

               Alignm identity:
               145
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               568-732
               

               Cow position:
               
               

               Alignm length:
               167
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               577-731
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               113
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               592-703
               

               Cow position:
               
               

               Alignm length:
               112
               

               Alignm identity:
               92
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.