Cow genome map
| Conread name: | Ss1.1-rcbl0_018973.5 |
| Conread position: | 1-212 |
| Cow position: | chr23:1402685-1402481 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 68 |
| Conread position: | 3-178 |
| Cow position: | chr23:1327273-1327102 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 221-719 |
| Cow position: | chr23:16615348-16614857 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 52 |
| Conread position: | 231-732 |
| Cow position: | chr23:4752702-4753186 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 29 |
| Conread position: | 235-541 |
| Cow position: | chr23:22875209-22874926 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 247-498 |
| Cow position: | chr23:31650110-31649862 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 252-696 |
| Cow position: | chr23:1402378-1401938 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 277-697 |
| Cow position: | chr23:26836803-26837214 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 109 |
| Conread position: | 278-732 |
| Cow position: | chr23:7046518-7046053 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 289-532 |
| Cow position: | chr23:19331862-19331620 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 289-731 |
| Cow position: | chr23:14948594-14948150 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 297 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 295-732 |
| Cow position: | chr23:2341246-2341686 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 71 |
| Conread position: | 296-725 |
| Cow position: | chr23:15877604-15877185 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 72 |
| Conread position: | 301-730 |
| Cow position: | chr23:14974408-14973969 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 302-630 |
| Cow position: | chr23:9545743-9546069 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 309-668 |
| Cow position: | chr23:17185854-17186224 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 325-694 |
| Cow position: | chr23:31595060-31594693 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 358-676 |
| Cow position: | chr23:29141010-29141325 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 105, 25 |
| Conread position: | 362-731 |
| Cow position: | chr23:13509869-13510250 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 30, 309 |
| Conread position: | 374-690 |
| Cow position: | chr23:25683807-25683486 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 261 |
| Conread position: | 386-732 |
| Cow position: | chr23:20155968-20155619 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 30 |
| Conread position: | 389-694 |
| Cow position: | chr23:11968582-11968890 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 23, 17 |
| Conread position: | 390-538 |
| Cow position: | chr23:6217121-6217266 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 391-732 |
| Cow position: | chr23:36031125-36030784 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 392-551 |
| Cow position: | chr23:30636048-30635888 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-628 |
| Cow position: | chr23:2026866-2026626 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 392-731 |
| Cow position: | chr23:5874392-5874060 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 392-732 |
| Cow position: | chr23:967097-966748 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr23:2716641-2716982 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 392-732 |
| Cow position: | chr23:2757847-2758191 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr23:4640371-4640033 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr23:4888926-4889274 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 392-732 |
| Cow position: | chr23:14965499-14965155 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 392-732 |
| Cow position: | chr23:19489795-19490133 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 392-732 |
| Cow position: | chr23:27399756-27400096 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 41 |
| Conread position: | 393-652 |
| Cow position: | chr23:15525864-15526129 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 393-732 |
| Cow position: | chr23:4510331-4510660 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 394-732 |
| Cow position: | chr23:4434706-4435047 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 315 |
| Conread position: | 396-532 |
| Cow position: | chr23:5778829-5778694 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 397-719 |
| Cow position: | chr23:14262119-14262443 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 21 |
| Conread position: | 401-525 |
| Cow position: | chr23:12887650-12887525 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 401-556 |
| Cow position: | chr23:988385-988230 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 401-631 |
| Cow position: | chr23:2574798-2575029 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 14 |
| Conread position: | 401-674 |
| Cow position: | chr23:22146991-22146715 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 8 |
| Conread position: | 401-725 |
| Cow position: | chr23:15219633-15219319 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 401-725 |
| Cow position: | chr23:29452055-29451734 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 138 |
| Conread position: | 401-730 |
| Cow position: | chr23:11778751-11779078 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 37 |
| Conread position: | 401-732 |
| Cow position: | chr23:2781951-2781618 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 401-732 |
| Cow position: | chr23:3014654-3014990 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 401-732 |
| Cow position: | chr23:17786067-17785732 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 401-732 |
| Cow position: | chr23:28913656-28913985 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 402-702 |
| Cow position: | chr23:19950329-19950027 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 20 |
| Conread position: | 402-730 |
| Cow position: | chr23:16616582-16616251 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 16 |
| Conread position: | 404-732 |
| Cow position: | chr23:15177337-15177664 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 409-725 |
| Cow position: | chr23:14779112-14778798 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 409-732 |
| Cow position: | chr23:31447078-31447405 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 413-732 |
| Cow position: | chr23:20302478-20302791 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 207 |
| Conread position: | 422-732 |
| Cow position: | chr23:28217566-28217880 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 423-544 |
| Cow position: | chr23:8980055-8979934 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-732 |
| Cow position: | chr23:2312957-2312650 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 284 |
| Conread position: | 429-641 |
| Cow position: | chr23:4360113-4360327 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 9 |
| Conread position: | 429-732 |
| Cow position: | chr23:23830249-23830550 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 91 |
| Conread position: | 456-731 |
| Cow position: | chr23:29403625-29403350 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 90, 122 |
| Conread position: | 462-730 |
| Cow position: | chr23:4817338-4817610 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 463-732 |
| Cow position: | chr23:1024700-1024421 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 58 |
| Conread position: | 469-732 |
| Cow position: | chr23:2794906-2794641 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 509-713 |
| Cow position: | chr23:28108025-28108227 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 37, 145 |
| Conread position: | 509-732 |
| Cow position: | chr23:27970903-27971130 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 509-732 |
| Cow position: | chr23:28025032-28025259 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 509-732 |
| Cow position: | chr23:28077736-28077962 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 509-732 |
| Cow position: | chr23:28368156-28367930 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 514-725 |
| Cow position: | chr23:31649573-31649366 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 527-719 |
| Cow position: | chr23:619051-618868 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 540-703 |
| Cow position: | chr23:7364339-7364503 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 540-703 |
| Cow position: | chr23:22874786-22874622 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 572-732 |
| Cow position: | chr23:16499017-16498856 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 593-732 |
| Cow position: | chr23:3880626-3880490 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 107 |
| Conread position: | 605-720 |
| Cow position: | chr23:12887514-12887399 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 615-732 |
| Cow position: | chr23:2026608-2026491 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 622-732 |
| Cow position: | chr23:3706601-3706711 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 639-732 |
| Cow position: | chr23:38794702-38794795 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.