Cow genome map

Conread name: Ss1.1-rcbl0_018973.5

Conread position: 1-212
Cow position:
Alignm length: 214
Alignm identity: 158
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 68

Conread position: 3-178
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 66

Conread position: 221-719
Cow position:
Alignm length: 507
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 52

Conread position: 231-732
Cow position:
Alignm length: 505
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 29

Conread position: 235-541
Cow position:
Alignm length: 310
Alignm identity: 225
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 8

Conread position: 247-498
Cow position:
Alignm length: 260
Alignm identity: 181
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 80

Conread position: 252-696
Cow position:
Alignm length: 456
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 42

Conread position: 277-697
Cow position:
Alignm length: 423
Alignm identity: 277
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 48, 109

Conread position: 278-732
Cow position:
Alignm length: 471
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 65

Conread position: 289-532
Cow position:
Alignm length: 247
Alignm identity: 175
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 44, 25

Conread position: 289-731
Cow position:
Alignm length: 454
Alignm identity: 297
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 113

Conread position: 295-732
Cow position:
Alignm length: 449
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 71

Conread position: 296-725
Cow position:
Alignm length: 431
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 72

Conread position: 301-730
Cow position:
Alignm length: 448
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 14

Conread position: 302-630
Cow position:
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 129

Conread position: 309-668
Cow position:
Alignm length: 375
Alignm identity: 246
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 36, 27

Conread position: 325-694
Cow position:
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 40

Conread position: 358-676
Cow position:
Alignm length: 326
Alignm identity: 219
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 105, 25

Conread position: 362-731
Cow position:
Alignm length: 386
Alignm identity: 265
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 30, 309

Conread position: 374-690
Cow position:
Alignm length: 323
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 261

Conread position: 386-732
Cow position:
Alignm length: 353
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 30

Conread position: 389-694
Cow position:
Alignm length: 315
Alignm identity: 202
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 23, 17

Conread position: 390-538
Cow position:
Alignm length: 149
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 391-732
Cow position:
Alignm length: 348
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 48

Conread position: 392-551
Cow position:
Alignm length: 162
Alignm identity: 134
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 8, 47

Conread position: 392-628
Cow position:
Alignm length: 242
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 392-731
Cow position:
Alignm length: 345
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 92

Conread position: 392-732
Cow position:
Alignm length: 354
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 347
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 79

Conread position: 392-732
Cow position:
Alignm length: 347
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 356
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 24

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 47

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 37

Conread position: 392-732
Cow position:
Alignm length: 346
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 41

Conread position: 393-652
Cow position:
Alignm length: 268
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 393-732
Cow position:
Alignm length: 343
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 394-732
Cow position:
Alignm length: 344
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 315

Conread position: 396-532
Cow position:
Alignm length: 138
Alignm identity: 113
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 33, 19

Conread position: 397-719
Cow position:
Alignm length: 334
Alignm identity: 219
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 21

Conread position: 401-525
Cow position:
Alignm length: 127
Alignm identity: 100
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 14

Conread position: 401-556
Cow position:
Alignm length: 158
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 14

Conread position: 401-631
Cow position:
Alignm length: 235
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 14

Conread position: 401-674
Cow position:
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 8

Conread position: 401-725
Cow position:
Alignm length: 329
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 401-725
Cow position:
Alignm length: 327
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 138

Conread position: 401-730
Cow position:
Alignm length: 334
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 37

Conread position: 401-732
Cow position:
Alignm length: 335
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 14

Conread position: 401-732
Cow position:
Alignm length: 338
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 14

Conread position: 401-732
Cow position:
Alignm length: 336
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 401-732
Cow position:
Alignm length: 334
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 37

Conread position: 402-702
Cow position:
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 20

Conread position: 402-730
Cow position:
Alignm length: 333
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 16

Conread position: 404-732
Cow position:
Alignm length: 334
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 11

Conread position: 409-725
Cow position:
Alignm length: 326
Alignm identity: 214
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 13

Conread position: 409-732
Cow position:
Alignm length: 328
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 0

Conread position: 413-732
Cow position:
Alignm length: 325
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 207

Conread position: 422-732
Cow position:
Alignm length: 315
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 423-544
Cow position:
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 428-732
Cow position:
Alignm length: 309
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 284

Conread position: 429-641
Cow position:
Alignm length: 217
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 9

Conread position: 429-732
Cow position:
Alignm length: 308
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 91

Conread position: 456-731
Cow position:
Alignm length: 280
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 90, 122

Conread position: 462-730
Cow position:
Alignm length: 273
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 463-732
Cow position:
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 58

Conread position: 469-732
Cow position:
Alignm length: 268
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 39

Conread position: 509-713
Cow position:
Alignm length: 209
Alignm identity: 167
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 37, 145

Conread position: 509-732
Cow position:
Alignm length: 228
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 509-732
Cow position:
Alignm length: 228
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 509-732
Cow position:
Alignm length: 227
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 509-732
Cow position:
Alignm length: 228
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 9

Conread position: 514-725
Cow position:
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 66

Conread position: 527-719
Cow position:
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 540-703
Cow position:
Alignm length: 166
Alignm identity: 125
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 84

Conread position: 540-703
Cow position:
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 572-732
Cow position:
Alignm length: 163
Alignm identity: 122
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 39, 65

Conread position: 593-732
Cow position:
Alignm length: 142
Alignm identity: 116
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 11, 107

Conread position: 605-720
Cow position:
Alignm length: 116
Alignm identity: 95
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 615-732
Cow position:
Alignm length: 118
Alignm identity: 99
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 622-732
Cow position:
Alignm length: 111
Alignm identity: 95
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 639-732
Cow position:
Alignm length: 94
Alignm identity: 84
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.